gene Gene symbol. gene_id Unique PAS identifier within gene. chrom Chromosome. strand Strand. snp_id Unique variant identifier. data_source Data source that variant came from. experiment Experiment description (why the variant is tested). pas_pos Position of PAS CSE (hg19). pas_pos_hg38 Position of PAS CSE (hg38). var_position Position of variant (hg19). var_position_hg38 Position of variant (hg38). rel_var_position Relative position of variant wrt CSE. ref_nucleotide Reference allele. var_nucleotide Alternate (variant) allele. ref_seq Reference sequence. var_seq Variant sequence. ref_seq_w_homology Reference sequence with reporter homology regions. var_seq_w_homology Variant sequence with reporter homology regions. ref_logit_pred_77_127 Predicted logit of cleavage in range 1-51bp downstream of CSE (APARENT2, reference sequence). var_logit_pred_77_127 Predicted logit of cleavage in range 1-51bp downstream of CSE (APARENT2, variant sequence). delta_logodds_77_127 Predicted log odds ratio of cleavage in range 1-51bp downstream of CSE between reference and variant sequences (APARENT2). ref_logit_pred_0_205 Predicted logit of cleavage anywhere in proximal PAS (APARENT2, reference sequence). var_logit_pred_0_205 Predicted logit of cleavage anywhere in proximal PAS (APARENT2, variant sequence). delta_logodds_0_205 Predicted log odds ratio of cleavage anywhere in proximal PAS between reference and variant sequences (APARENT2). ref_barcode Reporter barcode (reference sequence). var_barcode Reporter barcode (variant sequence). ref_var_hamming_dist Hamming distance between reference and variant sequences. ref_var_hamming_dist_w_homology Hamming distance between reference and variant sequences (with homology regions appended). ref_logit_corrected_77_127 Predicted logit of cleavage in range 1-51bp downstream of CSE, regressed onto 2019 oligo array (APARENT2, reference sequence). var_logit_corrected_77_127 Predicted logit of cleavage in range 1-51bp downstream of CSE, regressed onto 2019 oligo array (APARENT2, variant sequence). ref_iso_corrected_77_127 Predicted isoform abundance in range 1-51bp downstream of CSE, regressed onto 2019 oligo array (APARENT2, reference sequence). var_iso_corrected_77_127 Predicted isoform abundance in range 1-51bp downstream of CSE, regressed onto 2019 oligo array (APARENT2, variant sequence). delta_iso_corrected_77_127 Predicted difference in isoform abundance in range 1-51bp downstream of CSE between reference and variant sequences, regressed onto 2019 oligo array (APARENT2). ref_logit_corrected_0_205 Predicted logit of cleavage anywhere in proximal PAS, regressed onto 2019 oligo array (APARENT2, reference sequence). var_logit_corrected_0_205 Predicted logit of cleavage anywhere in proximal PAS, regressed onto 2019 oligo array (APARENT2, variant sequence). ref_iso_corrected_0_205 Predicted isoform abundance anywhere in proximal PAS, regressed onto 2019 oligo array (APARENT2, reference sequence). var_iso_corrected_0_205 Predicted isoform abundance anywhere in proximal PAS, regressed onto 2019 oligo array (APARENT2, variant sequence). delta_iso_corrected_0_205 Predicted difference in isoform abundance anywhere in proximal PAS between reference and variant sequences, regressed onto 2019 oligo array (APARENT2). ref_count_77_127_repl_1 Unique UMI RNA read count, in range 1-51bp downstream of CSE, reference sequence, replicate 1. ref_count_0_205_repl_1 Unique UMI RNA read count, anywhere in proximal PAS, reference sequence, replicate 1. ref_count_total_repl_1 Unique UMI RNA read count, anywhere in proximal PAS or distal PAS, reference sequence, replicate 1. ref_logit_77_127_repl_1 Measured logit of cleavage in range 1-51bp downstream of CSE, reference sequence, replicate 1. ref_logit_0_205_repl_1 Measured logit of cleavage anywhere in proximal PAS, reference sequence, replicate 1. var_count_77_127_repl_1 Unique UMI RNA read count, in range 1-51bp downstream of CSE, variant sequence, replicate 1. var_count_0_205_repl_1 Unique UMI RNA read count, anywhere in proximal PAS, variant sequence, replicate 1. var_count_total_repl_1 Unique UMI RNA read count, anywhere in proximal PAS or distal PAS, variant sequence, replicate 1. var_logit_77_127_repl_1 Measured logit of cleavage in range 1-51bp downstream of CSE, variant sequence, replicate 1. var_logit_0_205_repl_1 Measured logit of cleavage anywhere in proximal PAS, variant sequence, replicate 1. delta_logodds_true_77_127_repl_1 Measured variant log odds ratio of cleavage in range 1-51bp downstream of CSE, replicate 1. delta_logodds_true_0_205_repl_1 Measured variant log odds ratio of cleavage anywhere in proximal PAS, replicate 1. ref_count_77_127_repl_2 Unique UMI RNA read count, in range 1-51bp downstream of CSE, reference sequence, replicate 2. ref_count_0_205_repl_2 Unique UMI RNA read count, anywhere in proximal PAS, reference sequence, replicate 2. ref_count_total_repl_2 Unique UMI RNA read count, anywhere in proximal PAS or distal PAS, reference sequence, replicate 2. ref_logit_77_127_repl_2 Measured logit of cleavage in range 1-51bp downstream of CSE, reference sequence, replicate 2. ref_logit_0_205_repl_2 Measured logit of cleavage anywhere in proximal PAS, reference sequence, replicate 2. var_count_77_127_repl_2 Unique UMI RNA read count, in range 1-51bp downstream of CSE, variant sequence, replicate 2. var_count_0_205_repl_2 Unique UMI RNA read count, anywhere in proximal PAS, variant sequence, replicate 2. var_count_total_repl_2 Unique UMI RNA read count, anywhere in proximal PAS or distal PAS, variant sequence, replicate 2. var_logit_77_127_repl_2 Measured logit of cleavage in range 1-51bp downstream of CSE, variant sequence, replicate 2. var_logit_0_205_repl_2 Measured logit of cleavage anywhere in proximal PAS, variant sequence, replicate 2. delta_logodds_true_77_127_repl_2 Measured variant log odds ratio of cleavage in range 1-51bp downstream of CSE, replicate 2. delta_logodds_true_0_205_repl_2 Measured variant log odds ratio of cleavage anywhere in proximal PAS, replicate 2. ref_count_77_127_repl_pooled Unique UMI RNA read count, in range 1-51bp downstream of CSE, reference sequence, pooled replicates. ref_count_0_205_repl_pooled Unique UMI RNA read count, anywhere in proximal PAS, reference sequence, pooled replicates. ref_count_total_repl_pooled Unique UMI RNA read count, anywhere in proximal PAS or distal PAS, reference sequence, pooled replicates. ref_logit_77_127_repl_pooled Measured logit of cleavage in range 1-51bp downstream of CSE, reference sequence, pooled replicates. ref_logit_0_205_repl_pooled Measured logit of cleavage anywhere in proximal PAS, reference sequence, pooled replicates. var_count_77_127_repl_pooled Unique UMI RNA read count, in range 1-51bp downstream of CSE, variant sequence, pooled replicates. var_count_0_205_repl_pooled Unique UMI RNA read count, anywhere in proximal PAS, variant sequence, pooled replicates. var_count_total_repl_pooled Unique UMI RNA read count, anywhere in proximal PAS or distal PAS, variant sequence, pooled replicates. var_logit_77_127_repl_pooled Measured logit of cleavage in range 1-51bp downstream of CSE, variant sequence, pooled replicates. var_logit_0_205_repl_pooled Measured logit of cleavage anywhere in proximal PAS, variant sequence, pooled replicates. delta_logodds_true_77_127_repl_pooled Measured variant log odds ratio of cleavage in range 1-51bp downstream of CSE, pooled replicates. delta_logodds_true_0_205_repl_pooled Measured variant log odds ratio of cleavage anywhere in proximal PAS, pooled replicates.