LOCUS       101782_AICSDP-19        2777 bp    DNA     linear   UNA 12-APR-2018
DEFINITION  A new nucleotide sequence entered manually.
ACCESSION   urn.local.amandah.f6-8w43er4
VERSION     urn.local.amandah.f6-8w43er4
KEYWORDS    .
SOURCE      
  ORGANISM  
            .
FEATURES             Location/Qualifiers
     gene            <1..>1006
                     /gene="LAMP1"
                     /gene_synonym="CD107a; LAMPA; LGP120"
                     /note="lysosomal associated membrane protein 1; Derived
                     byautomated computational analysis using gene
                     predictionmethod: BestRefSeq,Gnomon."
                     /db_xref="GeneID:3916"
                     /db_xref="HGNC:HGNC:6499"
                     /db_xref="MIM:153330"
                     /label="LAMP1 gene"
     CDS             join(<1..52,145..315,870..>1006)
                     /gene="LAMP1"
                     /gene_synonym="CD107a; LAMPA; LGP120"
                     /note="Derived by automated computational analysis using
                     gene prediction method: BestRefSeq."
                     /codon_start=1
                     /product="lysosome-associated membrane glycoprotein 1
                     precursor"
                     /protein_id="NP_005552.3"
                     /db_xref="GI:112380628"
                     /db_xref="CCDS:CCDS41909.1"
                     /db_xref="GeneID:3916"
                     /db_xref="HGNC:HGNC:6499"
                     /db_xref="MIM:153330"
                     /translation="MAAPGSARRPLLLLLLLLLLGLMHCASAAMFMVKNGNGTACIMA
                     NFSAAFSVNYDTKSGPKNMTFDLPSDATVVLNRSSCGKENTSDPSLVIAFGRGHTLTL
                     NFTRNATRYSVQLMSFVYNLSDTHLFPNASSKEIKTVESITDIRADIDKKYRCVSGTQ
                     VHMNNVTVTLHDATIQAYLSNSSFSRGETRCEQDRPSPTTAPPAPPSPSPSPVPKSPS
                     VDKYNVSGTNGTCLLASMGLQLNLTYERKDNTTVTRLLNINPNKTSASGSCGAHLVTL
                     ELHSEGTTVLLFQFGMNASSSRFFLQGIQLNTILPDARDPAFKAANGSLRALQATVGN
                     SYKCNAEEHVRVTKAFSVNIFKVWVQAFKVEGGQFGSVEECLLDENSMLIPIAVGGAL
                     AGLVLIVLIAYLVGRKRSHAGYQTI"
                     /label="LAMP1 CDS"
     CDS             join(<1..52,145..315,870..>1006)
                     /gene="LAMP1"
                     /gene_synonym="CD107a; LAMPA; LGP120"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon."
                     /codon_start=1
                     /product="lysosome-associated membrane glycoprotein 1
                     isoform X1"
                     /protein_id="XP_011535796.1"
                     /db_xref="GI:767979244"
                     /db_xref="GeneID:3916"
                     /db_xref="HGNC:HGNC:6499"
                     /db_xref="MIM:153330"
                     /translation="MGLMHCASAAMFMVKNGNGTACIMANFSAAFSVNYDTKSGPKNM
                     TFDLPSDATVVLNRSSCGKENTSDPSLVIAFGRGHTLTLNFTRNATRYSVQLMSFVYN
                     LSDTHLFPNASSKEIKTVESITDIRADIDKKYRCVSGTQVHMNNVTVTLHDATIQAYL
                     SNSSFSRGETRCEQDRPSPTTAPPAPPSPSPSPVPKSPSVDKYNVSGTNGTCLLASMG
                     LQLNLTYERKDNTTVTRLLNINPNKTSASGSCGAHLVTLELHSEGTTVLLFQFGMNAS
                     SSRFFLQGIQLNTILPDARDPAFKAANGSLRALQATVGNSYKCNAEEHVRVTKAFSVN
                     IFKVWVQAFKVEGGQFGSVEECLLDENSMLIPIAVGGALAGLVLIVLIAYLVGRKRSH
                     AGYQTI"
                     /label="LAMP1 CDS"
     mRNA            join(<1..52,145..315,870..>1006)
                     /gene="LAMP1"
                     /gene_synonym="CD107a; LAMPA; LGP120"
                     /product="lysosomal associated membrane protein 1"
                     /inference="similar to RNA sequence, mRNA (same
                     species):RefSeq:NM_005561.3"
                     /exception="annotated by transcript or proteomic data"
                     /note="The RefSeq transcript has 3 substitutions compared
                     to this genomic sequence; Derived by automated
                     computational analysis using gene prediction method:
                     BestRefSeq."
                     /transcript_id="NM_005561.3"
                     /db_xref="GI:112380627"
                     /db_xref="GeneID:3916"
                     /db_xref="HGNC:HGNC:6499"
                     /db_xref="MIM:153330"
                     /label="LAMP1 mRNA"
     mRNA            join(<1..52,145..315,870..>1006)
                     /gene="LAMP1"
                     /gene_synonym="CD107a; LAMPA; LGP120"
                     /product="lysosomal associated membrane protein 1,
                     transcript variant X1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 138 ESTs, 357 long SRA
                     reads, 5 Proteins, and 98% coverage of the annotated
                     genomic feature by RNAseq alignments, including 43 samples
                     with support for all annotated introns"
                     /transcript_id="XM_011537494.1"
                     /db_xref="GI:767979243"
                     /db_xref="GeneID:3916"
                     /db_xref="HGNC:HGNC:6499"
                     /db_xref="MIM:153330"
                     /label="LAMP1 mRNA"
     misc_RNA        992..>1006
                     /created_by="User"
                     /modified_by="User"
                     /label="crRNA1 Binding Site"
     misc_RNA        complement(1000..>1006)
                     /created_by="User"
                     /modified_by="User"
                     /label="crRNA2 Binding Site"
     misc_RNA        1002..>1006
                     /created_by="User"
                     /modified_by="User"
                     /label="crRNA3 Binding Site"
     misc_feature    1007..1063
                     /created_by="User"
                     /modified_by="User"
                     /label="EFGSTGSTGSTGADPPVAT Linker"
     ORF             1064..1777
                     /created_by="User"
                     /modified_by="User"
                     /label="mEGFP"
     gene            <1778..>2777
                     /gene="LAMP1"
                     /gene_synonym="CD107a; LAMPA; LGP120"
                     /note="lysosomal associated membrane protein 1; Derived
                     byautomated computational analysis using gene
                     predictionmethod: BestRefSeq,Gnomon."
                     /db_xref="GeneID:3916"
                     /db_xref="HGNC:HGNC:6499"
                     /db_xref="MIM:153330"
                     /label="LAMP1 gene"
     CDS             <1778..1780
                     /gene="LAMP1"
                     /gene_synonym="CD107a; LAMPA; LGP120"
                     /note="Derived by automated computational analysis using
                     gene prediction method: BestRefSeq."
                     /codon_start=1
                     /product="lysosome-associated membrane glycoprotein 1
                     precursor"
                     /protein_id="NP_005552.3"
                     /db_xref="GI:112380628"
                     /db_xref="CCDS:CCDS41909.1"
                     /db_xref="GeneID:3916"
                     /db_xref="HGNC:HGNC:6499"
                     /db_xref="MIM:153330"
                     /translation="MAAPGSARRPLLLLLLLLLLGLMHCASAAMFMVKNGNGTACIMA
                     NFSAAFSVNYDTKSGPKNMTFDLPSDATVVLNRSSCGKENTSDPSLVIAFGRGHTLTL
                     NFTRNATRYSVQLMSFVYNLSDTHLFPNASSKEIKTVESITDIRADIDKKYRCVSGTQ
                     VHMNNVTVTLHDATIQAYLSNSSFSRGETRCEQDRPSPTTAPPAPPSPSPSPVPKSPS
                     VDKYNVSGTNGTCLLASMGLQLNLTYERKDNTTVTRLLNINPNKTSASGSCGAHLVTL
                     ELHSEGTTVLLFQFGMNASSSRFFLQGIQLNTILPDARDPAFKAANGSLRALQATVGN
                     SYKCNAEEHVRVTKAFSVNIFKVWVQAFKVEGGQFGSVEECLLDENSMLIPIAVGGAL
                     AGLVLIVLIAYLVGRKRSHAGYQTI"
                     /label="LAMP1 CDS"
     CDS             <1778..1780
                     /gene="LAMP1"
                     /gene_synonym="CD107a; LAMPA; LGP120"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon."
                     /codon_start=1
                     /product="lysosome-associated membrane glycoprotein 1
                     isoform X1"
                     /protein_id="XP_011535796.1"
                     /db_xref="GI:767979244"
                     /db_xref="GeneID:3916"
                     /db_xref="HGNC:HGNC:6499"
                     /db_xref="MIM:153330"
                     /translation="MGLMHCASAAMFMVKNGNGTACIMANFSAAFSVNYDTKSGPKNM
                     TFDLPSDATVVLNRSSCGKENTSDPSLVIAFGRGHTLTLNFTRNATRYSVQLMSFVYN
                     LSDTHLFPNASSKEIKTVESITDIRADIDKKYRCVSGTQVHMNNVTVTLHDATIQAYL
                     SNSSFSRGETRCEQDRPSPTTAPPAPPSPSPSPVPKSPSVDKYNVSGTNGTCLLASMG
                     LQLNLTYERKDNTTVTRLLNINPNKTSASGSCGAHLVTLELHSEGTTVLLFQFGMNAS
                     SSRFFLQGIQLNTILPDARDPAFKAANGSLRALQATVGNSYKCNAEEHVRVTKAFSVN
                     IFKVWVQAFKVEGGQFGSVEECLLDENSMLIPIAVGGALAGLVLIVLIAYLVGRKRSH
                     AGYQTI"
                     /label="LAMP1 CDS"
     mRNA            <1778..>2777
                     /gene="LAMP1"
                     /gene_synonym="CD107a; LAMPA; LGP120"
                     /product="lysosomal associated membrane protein 1"
                     /inference="similar to RNA sequence, mRNA (same
                     species):RefSeq:NM_005561.3"
                     /exception="annotated by transcript or proteomic data"
                     /note="The RefSeq transcript has 3 substitutions compared
                     to this genomic sequence; Derived by automated
                     computational analysis using gene prediction method:
                     BestRefSeq."
                     /transcript_id="NM_005561.3"
                     /db_xref="GI:112380627"
                     /db_xref="GeneID:3916"
                     /db_xref="HGNC:HGNC:6499"
                     /db_xref="MIM:153330"
                     /label="LAMP1 mRNA"
     mRNA            <1778..>2777
                     /gene="LAMP1"
                     /gene_synonym="CD107a; LAMPA; LGP120"
                     /product="lysosomal associated membrane protein 1,
                     transcript variant X1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 138 ESTs, 357 long SRA
                     reads, 5 Proteins, and 98% coverage of the annotated
                     genomic feature by RNAseq alignments, including 43 samples
                     with support for all annotated introns"
                     /transcript_id="XM_011537494.1"
                     /db_xref="GI:767979243"
                     /db_xref="GeneID:3916"
                     /db_xref="HGNC:HGNC:6499"
                     /db_xref="MIM:153330"
                     /label="LAMP1 mRNA"
     misc_RNA        <1778..1792
                     /created_by="User"
                     /modified_by="User"
                     /label="crRNA3 Binding Site"
     misc_RNA        complement(<1778..1790)
                     /created_by="User"
                     /modified_by="User"
                     /label="crRNA2 Binding Site"
     misc_RNA        <1778..1782
                     /created_by="User"
                     /modified_by="User"
                     /label="crRNA1 Binding Site"
ORIGIN      
        1 cggtttttcc tacaaggaat ccagttgaat acaattcttc ctgacgccag aggtgagaac
       61 ccacaatctc tgcgagcccc gcccccgccc ccgcccgcgc ccccagggta ttctggagcc
      121 actagacctc tgtgtgtgtt gcagaccctg cctttaaagc tgccaacggc tccctgcgag
      181 cgctgcaggc cacagtcggc aattcctaca agtgcaacgc ggaggagcac gtccgtgtca
      241 cgaaggcgtt ttcagtcaat atattcaaag tgtgggtcca ggctttcaag gtggaaggtg
      301 gccagtttgg ctctggtgag tgtcaccgag ggcagctgtc gcggggtgtg gaggacgtgc
      361 ttcagactcc gcctgtggac gtttagtcgc ttccgtgtgg gctggggcga cgcccctgtt
      421 cctctgcaag gagctgtttc ttcttgccgg tctgagattc tagaggtaac tccccctgct
      481 ttagagaggc ccagcgtgtc tctcagctgg gagcccctgg taccatttga gagtaaggga
      541 atcattttaa gaaacagtgg tggcgcttct cccatgaacg ttgaatacaa cactgtcatc
      601 tgatgtgcac agaggccctg gacgcagcac agctgtccgg ccacagcccc tgattccaga
      661 cgggggagag acgtgtgtgg tttcctcgcc gtgcagagag caccagtctc tgcagcggct
      721 tccccaagtg acaattccag ctagagctgg aaccttccgc cagggttcct ctttgccttt
      781 tggctgatgt gggggagtgg tggggagaga ggcctgtttg caggcccctg tgtgagcaga
      841 gccctgacac catccgtctg tcttggcagt ggaggagtgt ctgctggacg agaacagcat
      901 gctgatcccc atcgctgtgg gtggtgccct ggcggggctg gtcctcatcg tcctcatcgc
      961 ctacctcgtc ggcaggaaga ggagtcacgc aggctatcag actatcgaat ttggcagcac
     1021 cggcagcacc ggcagcaccg gcgcggatcc gccggtggcg accgtgagca agggcgagga
     1081 gctgttcacc ggggtggtgc ccatcctggt cgagctggac ggcgacgtaa acggccacaa
     1141 gttcagcgtg tccggcgagg gcgagggcga tgccacctac ggcaagctga ccctgaagtt
     1201 catctgcacc accggcaagc tgcccgtgcc ctggcccacc ctcgtgacca ccctgaccta
     1261 cggcgtgcag tgcttcagcc gctaccccga ccacatgaag cagcacgact tcttcaagtc
     1321 cgccatgccc gaaggctacg tccaggagcg caccatcttc ttcaaggacg acggcaacta
     1381 caagacccgc gccgaggtga agttcgaggg cgacaccctg gtgaaccgca tcgagctgaa
     1441 gggcatcgac ttcaaggagg acggcaacat cctggggcac aagctggagt acaactacaa
     1501 cagccacaac gtctatatca tggccgacaa gcagaagaac ggcatcaagg tgaacttcaa
     1561 gatccgccac aacatcgagg acggcagcgt gcagctcgcc gaccactacc agcagaacac
     1621 ccccatcggc gacggccccg tgctgctgcc cgacaaccac tacctgagca cccagtccaa
     1681 gctgagcaaa gaccccaacg agaagcgcga tcacatggtc ctgctggagt tcgtgaccgc
     1741 cgccgggatc actctcggca tggacgagct gtacaagtag cctggtgcac gcagccacag
     1801 cagctgcagg ggcctctgtt cctttctctg ggcttagggt cctgtcgaag gggaggcaca
     1861 ctttctggca aacgtttctc aaatctgctt catccaatgt gaagttcatc ttgcagcatt
     1921 tactatgcac aacagagtaa ctatcgaaat gacggtgtta attttgctaa ctgggttaaa
     1981 tattttgcta actggttaaa cattaatatt taccaaagta ggattttgag ggtgggggtg
     2041 ctctctctga gggggtgggg gtgccgctgt ctctgagggg tgggggtgcc gctgtctctg
     2101 aggggtgggg gtgccgctct ctctgagggg gtgggggtgc cgctttctct gagggggtgg
     2161 gggtgccgct ctctctgagg gggtgggggt gctgctctct ccgaggggtg gaatgccgct
     2221 gtctctgagg ggtgggggtg ccgctctaaa ttggctccat atcatttgag tttagggttc
     2281 tggtgtttgg tttcttcatt ctttactgca ctcagattta agccttacaa agggaaagcc
     2341 tctggccgtc acacgtagga cgcatgaagg tcactcgtgg tgaggctgac atgctcacac
     2401 attacaacag tagagaggga acatcctaag acagaggaac tccagagatg agtgtctgga
     2461 gcgcttcagt tcagctttaa aggccaggac gggccacacg tggctggcgg cctcgttcca
     2521 gtggcggcac gtccttgggc gtctctaatg tctgcagctc aagggctggc acttttttaa
     2581 atataaaaat gggtgttatt tttattttta tttgtaaagt gatttttggt cttctgttga
     2641 cattcggggt gatcctgttc tgcgctgtgt acaatgtgag atcggtgcgt tctcctgatg
     2701 ttttgccgtg gcttggggat tgtacacggg accagctcac gtaatgcatt gcctgtaaca
     2761 atgtaataaa aagcctc
//
