LOCUS 109122_AICSDP-50 2765 bp DNA linear UNA 19-DEC-2018 DEFINITION A new nucleotide sequence entered manually. ACCESSION urn.local.amandah.5i-9vz4wgl VERSION urn.local.amandah.5i-9vz4wgl KEYWORDS . SOURCE ORGANISM . FEATURES Location/Qualifiers source <1..>1000 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" /chromosome=5 /label="source Homo sapiens" gene <1..>1000 /gene="NPM1" /gene_synonym="B23; NPM" /note="nucleophosmin (nucleolar phosphoprotein B23, numatrin); Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon." /db_xref="GeneID:4869" /db_xref="HGNC:HGNC:7910" /db_xref="HPRD:01246" /db_xref="MIM:164040" /label="NPM1 gene" misc_feature 279 /created_by="User" /modified_by="User" /label="WTC Homozygous Indel: G to GT" misc_RNA 908..927 /created_by="User" /modified_by="User" /label="crRNA3 Binding Site" misc_feature 929 /Original_Bases="G" /label="G" /note="Geneious type: Editing History Replacement" modified_base 929 /created_by="User" /modified_by="User" /label="G to C" misc_RNA 960..979 /created_by="User" /modified_by="User" /label="crRNA2 Binding Site" misc_feature 962 /Original_Bases="C" /label="C" /note="Geneious type: Editing History Replacement" modified_base 962 /created_by="User" /modified_by="User" /label="C to T" misc_RNA complement(964..983) /created_by="User" /modified_by="User" /label="crRNA1 Binding Site" CDS 965..>1000 /gene="NPM1" /gene_synonym="B23; NPM" /note="isoform 1 is encoded by transcript variant 1; Derived by automated computational analysis using gene prediction method: BestRefSeq." /codon_start=1 /product="nucleophosmin isoform 1" /protein_id="NP_002511.1" /db_xref="CCDS:CCDS4376.1" /db_xref="GeneID:4869" /db_xref="HGNC:HGNC:7910" /db_xref="HPRD:01246" /db_xref="MIM:164040" /translation="MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSL RTVSLGAGAKDELHIVEAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRL KCGSGPVHISGQHLVAVEEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAA DEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVKKSIRDTPAKNAQKSNQNGKDSKPSS TPRSKGQESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKGGSLPKVEAKFINYVKNCF RMTDQEAIQDLWQWRKSL" /label="NPM1 CDS" CDS 965..>1000 /gene="NPM1" /gene_synonym="B23; NPM" /note="isoform 2 is encoded by transcript variant 2; Derived by automated computational analysis using gene prediction method: BestRefSeq." /codon_start=1 /product="nucleophosmin isoform 2" /protein_id="NP_954654.1" /db_xref="CCDS:CCDS4377.1" /db_xref="GeneID:4869" /db_xref="HGNC:HGNC:7910" /db_xref="HPRD:01246" /db_xref="MIM:164040" /translation="MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSL RTVSLGAGAKDELHIVEAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRL KCGSGPVHISGQHLVAVEEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAA DEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVKKGQESFKKQEKTPKTPKGPSSVEDI KAKMQASIEKGGSLPKVEAKFINYVKNCFRMTDQEAIQDLWQWRKSL" /label="NPM1 CDS" CDS 965..>1000 /gene="NPM1" /gene_synonym="B23; NPM" /note="Derived by automated computational analysis using gene prediction method: Gnomon." /codon_start=1 /product="nucleophosmin isoform X1" /protein_id="XP_011532866.1" /db_xref="GeneID:4869" /db_xref="HGNC:HGNC:7910" /db_xref="HPRD:01246" /db_xref="MIM:164040" /translation="MNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGP VHISGQHLVAVEEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDD DDEEDDDEDDDDDDFDDEEAEEKAPVKKSIRDTPAKNAQKSNQNGKDSKPSSTPRSKG QESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKGGSLPKVEAKFINYVKNCFRMTDQE AIQDLWQWRKSL" /label="NPM1 CDS" mRNA 965..>1000 /gene="NPM1" /gene_synonym="B23; NPM" /product="nucleophosmin (nucleolar phosphoprotein B23, numatrin), transcript variant 1" /note="Derived by automated computational analysis using gene prediction method: BestRefSeq." /transcript_id="NM_002520.6" /db_xref="GeneID:4869" /db_xref="HGNC:HGNC:7910" /db_xref="HPRD:01246" /db_xref="MIM:164040" /label="NPM1 mRNA" mRNA 965..>1000 /gene="NPM1" /gene_synonym="B23; NPM" /product="nucleophosmin (nucleolar phosphoprotein B23, numatrin), transcript variant 2" /note="Derived by automated computational analysis using gene prediction method: BestRefSeq." /transcript_id="NM_199185.3" /db_xref="GeneID:4869" /db_xref="HGNC:HGNC:7910" /db_xref="HPRD:01246" /db_xref="MIM:164040" /label="NPM1 mRNA" mRNA 965..>1000 /gene="NPM1" /gene_synonym="B23; NPM" /product="nucleophosmin (nucleolar phosphoprotein B23, numatrin), transcript variant X2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 438 ESTs, 722 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 165 samples with support for all annotated introns" /transcript_id="XM_011534564.1" /db_xref="GeneID:4869" /db_xref="HGNC:HGNC:7910" /db_xref="HPRD:01246" /db_xref="MIM:164040" /label="NPM1 mRNA" misc_feature 981 /Original_Bases="G" /label="G" /note="Geneious type: Editing History Replacement" modified_base 981 /created_by="User" /modified_by="User" /label="C to G" misc_feature 1001..1051 /created_by="User" /modified_by="User" /label="KPNSAVDGTAGPGSIAT Linker" ORF 1052..1765 /created_by="User" /modified_by="User" /label="mEGFP" source <1766..>2765 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" /chromosome=5 /label="source Homo sapiens" gene <1766..2103 /gene="NPM1" /gene_synonym="B23; NPM" /note="nucleophosmin (nucleolar phosphoprotein B23, numatrin); Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon." /db_xref="GeneID:4869" /db_xref="HGNC:HGNC:7910" /db_xref="HPRD:01246" /db_xref="MIM:164040" /label="NPM1 gene" CDS <1766..1768 /gene="NPM1" /gene_synonym="B23; NPM" /note="isoform 1 is encoded by transcript variant 1; Derived by automated computational analysis using gene prediction method: BestRefSeq." /codon_start=1 /product="nucleophosmin isoform 1" /protein_id="NP_002511.1" /db_xref="CCDS:CCDS4376.1" /db_xref="GeneID:4869" /db_xref="HGNC:HGNC:7910" /db_xref="HPRD:01246" /db_xref="MIM:164040" /translation="MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSL RTVSLGAGAKDELHIVEAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRL KCGSGPVHISGQHLVAVEEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAA DEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVKKSIRDTPAKNAQKSNQNGKDSKPSS TPRSKGQESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKGGSLPKVEAKFINYVKNCF RMTDQEAIQDLWQWRKSL" /label="NPM1 CDS" CDS <1766..1768 /gene="NPM1" /gene_synonym="B23; NPM" /note="isoform 2 is encoded by transcript variant 2; Derived by automated computational analysis using gene prediction method: BestRefSeq." /codon_start=1 /product="nucleophosmin isoform 2" /protein_id="NP_954654.1" /db_xref="CCDS:CCDS4377.1" /db_xref="GeneID:4869" /db_xref="HGNC:HGNC:7910" /db_xref="HPRD:01246" /db_xref="MIM:164040" /translation="MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSL RTVSLGAGAKDELHIVEAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRL KCGSGPVHISGQHLVAVEEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAA DEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVKKGQESFKKQEKTPKTPKGPSSVEDI KAKMQASIEKGGSLPKVEAKFINYVKNCFRMTDQEAIQDLWQWRKSL" /label="NPM1 CDS" CDS <1766..1768 /gene="NPM1" /gene_synonym="B23; NPM" /note="Derived by automated computational analysis using gene prediction method: Gnomon." /codon_start=1 /product="nucleophosmin isoform X1" /protein_id="XP_011532866.1" /db_xref="GeneID:4869" /db_xref="HGNC:HGNC:7910" /db_xref="HPRD:01246" /db_xref="MIM:164040" /translation="MNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGP VHISGQHLVAVEEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDD DDEEDDDEDDDDDDFDDEEAEEKAPVKKSIRDTPAKNAQKSNQNGKDSKPSSTPRSKG QESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKGGSLPKVEAKFINYVKNCFRMTDQE AIQDLWQWRKSL" /label="NPM1 CDS" mRNA <1766..2087 /gene="NPM1" /gene_synonym="B23; NPM" /product="nucleophosmin (nucleolar phosphoprotein B23, numatrin), transcript variant 1" /note="Derived by automated computational analysis using gene prediction method: BestRefSeq." /transcript_id="NM_002520.6" /db_xref="GeneID:4869" /db_xref="HGNC:HGNC:7910" /db_xref="HPRD:01246" /db_xref="MIM:164040" /label="NPM1 mRNA" mRNA <1766..2087 /gene="NPM1" /gene_synonym="B23; NPM" /product="nucleophosmin (nucleolar phosphoprotein B23, numatrin), transcript variant 2" /note="Derived by automated computational analysis using gene prediction method: BestRefSeq." /transcript_id="NM_199185.3" /db_xref="GeneID:4869" /db_xref="HGNC:HGNC:7910" /db_xref="HPRD:01246" /db_xref="MIM:164040" /label="NPM1 mRNA" mRNA <1766..2087 /gene="NPM1" /gene_synonym="B23; NPM" /product="nucleophosmin (nucleolar phosphoprotein B23, numatrin), transcript variant X2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 438 ESTs, 722 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 165 samples with support for all annotated introns" /transcript_id="XM_011534564.1" /db_xref="GeneID:4869" /db_xref="HGNC:HGNC:7910" /db_xref="HPRD:01246" /db_xref="MIM:164040" /label="NPM1 mRNA" ORIGIN 1 atttaatatt ggcattcggt attcagttac cttgtacctg agaacccatt ggctgtgaaa 61 cagtgacagc tgagagaatc ctgagtcatc tcatttctag ttcttggtga acttctggac 121 ttttcttcag aaccaccttg ccatgttggc caggctggtc ttgaactcct gacctctcag 181 gtgatccaac accttggcct cttaaagtgc tgggattaca ggcatgagcc accatgcctg 241 gccagctgtt ttttttgttg gtttgttttt tgttttggtt acccatctgt agtgtgatct 301 tggctcactg caacctctgc ctcttgggct caggcagtcc tcccacctca gcctcctgag 361 tagctgggcc tcctgtagtt gcacaccacc aagcctggct aatttttgca tttttagtag 421 acagggtttc accatgttgc ccaggctggt ctcaaattcc tgagctgaag tgatctgccc 481 gcctcagtct cccaaagtgt agggattaca ggcgtgagcc accatgccta gcctcagcat 541 atagtttttt ctaaatgtac acatgcccag gcacacatgc acaggcaatt cagaataagt 601 ttctggtgtt tatgtaactt tatttgccaa atctggccaa ctctaaagct gatctcggga 661 gatgaagttg gaagtaacat tggccatatg ggtctctgtt ctttctgttg atttccttaa 721 gtaaataatg ctaaactatt aaataattat tagtatattg ttcacatttt tatgactgat 781 taaagtgttt ggaattaaat tacatctgag tataaatttt cttggagtca tatctttatc 841 tagagttaac tctctggtgg tagaatgaaa aatagatgtt gaactatgca aagagacatt 901 taatttattg atgtctatga agtgttgtcg ttccttaacc acatttcttt tttttttttt 961 ctaggctatt caagatctct cgcagtggag gaagtctctt aagcccaaca gcgccgtgga 1021 cggcaccgct ggccctggca gcatcgccac cgtgagcaag ggcgaggagc tgttcaccgg 1081 ggtggtgccc atcctggtcg agctggacgg cgacgtaaac ggccacaagt tcagcgtgtc 1141 cggcgagggc gagggcgatg ccacctacgg caagctgacc ctgaagttca tctgcaccac 1201 cggcaagctg cccgtgccct ggcccaccct cgtgaccacc ctgacctacg gcgtgcagtg 1261 cttcagccgc taccccgacc acatgaagca gcacgacttc ttcaagtccg ccatgcccga 1321 aggctacgtc caggagcgca ccatcttctt caaggacgac ggcaactaca agacccgcgc 1381 cgaggtgaag ttcgagggcg acaccctggt gaaccgcatc gagctgaagg gcatcgactt 1441 caaggaggac ggcaacatcc tggggcacaa gctggagtac aactacaaca gccacaacgt 1501 ctatatcatg gccgacaagc agaagaacgg catcaaggtg aacttcaaga tccgccacaa 1561 catcgaggac ggcagcgtgc agctcgccga ccactaccag cagaacaccc ccatcggcga 1621 cggccccgtg ctgctgcccg acaaccacta cctgagcacc cagtccaagc tgagcaaaga 1681 ccccaacgag aagcgcgatc acatggtcct gctggagttc gtgaccgccg ccgggatcac 1741 tctcggcatg gacgagctgt acaagtaaga aaatagttta aacaatttgt taaaaaattt 1801 tccgtcttat ttcatttctg taacagttga tatctggctg tcctttttat aatgcagagt 1861 gagaactttc cctaccgtgt ttgataaatg ttgtccaggt tctattgcca agaatgtgtt 1921 gtccaaaatg cctgtttagt ttttaaagat ggaactccac cctttgcttg gttttaagta 1981 tgtatggaat gttatgatag gacatagtag tagcggtggt cagacatgga aatggtgggg 2041 agacaaaaat atacatgtga aataaaactc agtattttaa taaagtagca cggtttctat 2101 tgacttattt aactgcttta tactttgtca aagaaataat taatgtagtt aggaatggca 2161 aatagtcttg taaaattcta tgagaatgtc cctgccctcc ccttcaatat tctctctgga 2221 gctaaccact ttttcatcat aaggatttag tgctgtgttc ccacctcctg atgatagtta 2281 acaattatta taactatgca acatgtttcc aaatgttcca ttagacctcc tatctgccta 2341 ttctagcctc acttgcaaag aaaatgtggc atgttaaaac agcttaaaag cagcctttca 2401 acctgtatgg ttttttcccc taggctggag tgcagtggca caatctcagc ttattgcagc 2461 ttctgcttct tgggttcaag caggtctcct gcctcagcct cccaagtagc tgggattaca 2521 ggtgtgagcc accagcccgg ctaatttttg tatttttagt agagatgggg tttcaccttg 2581 ttggccaggc tggtctcgaa ctcctgagct caagtgatct gcccacctcg gcttcctaaa 2641 gtgctaggat tataggtgtg agcaactgca cctgacctca acctggattc cttatctgaa 2701 tcaaagcaat tatttcagtg actatttgct caagttgcct agtacttctt acagatgtat 2761 aggag //