LOCUS pEGFP_human_ACF 5706 bp ds-DNA circular 12-JUN-2018 DEFINITION . ACCESSION VERSION SOURCE . ORGANISM . COMMENT COMMENT COMMENT ApEinfo:methylated:1 FEATURES Location/Qualifiers misc_feature 2366..5706 /note="Region on donor sequence (124 pFLAG-AID wrong): 1262..628" /note="CLC name: 124 pFLAG-AID wrong" /label=Region on donor sequence /ApEinfo_fwdcolor="#fff9f0" /ApEinfo_revcolor="#121eff" /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} width 5 offset 0" CDS join(604..694,696..2364) /gene="A1CF" /gene_synonym="ACF; ACF64; ACF65; APOBEC1CF; ASP; RP11-564C4.2" /note="isoform 1 is encoded by transcript variant 1; APOBEC-1 stimulating protein; apo-B RNA editing protein; apobec-1 complementation factor (ACF) (ASP)" /codon_start=1 /product="APOBEC1 complementation factor isoform 1" /protein_id="NP_055391.2" /db_xref="GI:20357572" /db_xref="CCDS:CCDS7241.1" /db_xref="GeneID:29974" /db_xref="HGNC:24086" /db_xref="HPRD:10627" /translation="MESNHKSGDGLSGTQKEAALRALVQRTGYSLVQENGQRKYGGPP PGWDAAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVT FSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVT EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEP EVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNR EDAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGTMLQGEYTYSLGQV YDPTTTYLGAPVFYAPQTYAAIPSLHFPATKGHLSNRAIIRAPSVRGAAGVRGLGGRG YLAYTGLGRGYQVKGDKREDKLYDILPGMELTPMNPVTLKPQGIKLAPQILEEICQKN NWGQPVYQLHSAIGQDQRQLFLYKITIPALASQNPAIHPFTPPKLSAFVDEAKTYAAE YTLQTLGIPTDGGDGTMATAAAAATAFPGYAVPNATAPVSAAQLKQAVTLGQDLAAYT TYEVYPTFAVTARGDGYGTF" /label=APOBEC1 complementation factor isoform 1 /ApEinfo_fwdcolor="#5aff67" /ApEinfo_revcolor="green" /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} width 5 offset 0" CDS 3602..4396 /codon_start=1 /transl_table=11 /product="neomycin phosphotransferase" /protein_id="AAB08061.1" /db_xref="GI:1373320" /note="Oriinal location: 2623..3417" /note="CLC name: Neomycin" /label=neomycin phosphotransferase /ApEinfo_fwdcolor="#5aff67" /ApEinfo_revcolor="green" /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} width 5 offset 0" rep_origin 4928..5610 /label=ColE1 origin /ApEinfo_fwdcolor="gray50" /ApEinfo_revcolor="gray50" /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} width 5 offset 0" rep_origin complement(2754..3060) /label=F1 ori /ApEinfo_fwdcolor="gray50" /ApEinfo_revcolor="gray50" /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} width 5 offset 0" CDS 3605..4396 /label=Kan/neoR /ApEinfo_fwdcolor="yellow" /ApEinfo_revcolor="yellow" /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} width 5 offset 0" promoter 3371..3567 /label=SV40 early promoter /ApEinfo_fwdcolor="cornflower blue" /ApEinfo_revcolor="cornflower blue" /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} width 5 offset 0" promoter 239..589 /label=CMV promoter /ApEinfo_fwdcolor="#00bfbf" /ApEinfo_revcolor="green" /ApEinfo_graphicformat="arrow_data {{0 1 2 0 0 -1} {} 0} width 5 offset 0" ORIGIN 1 TAGTTATTAA TAGTAATCAA TTACGGGGTC ATTAGTTCAT AGCCCATATA TGGAGTTCCG 61 CGTTACATAA CTTACGGTAA ATGGCCCGCC TGGCTGACCG CCCAACGACC CCCGCCCATT 121 GACGTCAATA ATGACGTATG TTCCCATAGT AACGCCAATA GGGACTTTCC ATTGACGTCA 181 ATGGGTGGAG TATTTACGGT AAACTGCCCA CTTGGCAGTA CATCAAGTGT ATCATATGCC 241 AAGTACGCCC CCTATTGACG TCAATGACGG TAAATGGCCC GCCTGGCATT ATGCCCAGTA 301 CATGACCTTA TGGGACTTTC CTACTTGGCA GTACATCTAC GTATTAGTCA TCGCTATTAC 361 CATGGTGATG CGGTTTTGGC AGTACATCAA TGGGCGTGGA TAGCGGTTTG ACTCACGGGG 421 ATTTCCAAGT CTCCACCCCA TTGACGTCAA TGGGAGTTTG TTTTGGCACC AAAATCAACG 481 GGACTTTCCA AAATGTCGTA ACAACTCCGC CCCATTGACG CAAATGGGCG GTAGGCGTGT 541 ACGGTGGGAG GTCTATATAA GCAGAGCTGG TTTAGTGAAC CGTCAGATCC GCTAGCGTCG 601 acaatggaat caaatcacaa atccggggat ggattgagcg gcactcagaa ggaagcagcc 661 ctccgcgcac tggtccagcg cacaggatat agctcggtcc aggaaaatgg acaaagaaaa 721 tatggtggcc ctccacctgg ttgggatgct gcaccccctg aaaggggctg tgaaattttt 781 attggaaaac ttccccgaga cctttttgag gatgagctta taccattatg tgaaaaaatc 841 ggtaaaattt atgaaatgag aatgatgatg gattttaatg gcaacaatag aggatatgca 901 tttgtaacat tttcaaataa agtggaagcc aagaatgcaa tcaagcaact taataattat 961 gaaattagaa atgggcgcct cttaggggtt tgtgccagtg tggacaactg ccgattattt 1021 gttgggggca tcccaaaaac caaaaagaga gaagaaatct tatcggagat gaaaaaggtt 1081 actgaaggtg ttgtcgatgt catcgtctac ccaagcgctg cagataaaac caaaaaccga 1141 ggctttgcct tcgtggagta tgagagtcat cgagcagctg ccatggcgag gaggaaactg 1201 ctaccaggaa gaattcagtt atggggacat ggtattgcag tagactgggc agagccagaa 1261 gtagaagttg atgaagatac aatgtcttca gtgaaaatcc tatatgtaag aaatcttatg 1321 ctgtctacct ctgaagagat gattgaaaag gaattcaaca atatcaaacc aggtgctgtg 1381 gagagggtga agaaaattcg agactatgct tttgtgcact tcagtaaccg agaagatgca 1441 gttgaggcta tgaaagcttt aaatggcaag gtgctggatg gttcccccat tgaagtcacc 1501 ctagcaaaac cagtggacaa ggacagttat gttaggtata cccgaggcac aggtggaagg 1561 ggcaccatgc tgcaaggaga gtatacctac tctttgggcc aagtttatga tcccaccaca 1621 acctaccttg gagctcctgt cttctatgcc ccccagacct atgcagcaat tcccagtctt 1681 catttcccag ccaccaaagg acatctcagc aacagagcca ttatccgagc cccttctgtt 1741 agaggggctg cgggagtgag aggactgggc ggccgtggct atttggcata cacaggcctg 1801 ggtcgaggat accaggtcaa aggagacaaa agagaagaca aactctatga cattttacct 1861 gggatggagc tcaccccaat gaatcctgtc acattaaaac cccaaggaat taaactcgct 1921 ccccagatat tagaagagat ttgtcagaaa aataactggg gacagccagt gtaccagctg 1981 cactctgcta ttggacaaga ccaaagacag ctattcttgt acaaaataac tattcctgct 2041 ctagccagcc agaatcctgc aatccaccct ttcacacctc caaagctgag tgcctttgtg 2101 gatgaagcaa agacgtatgc agccgaatac accctgcaga ccctgggcat ccccactgat 2161 ggaggcgatg gcaccatggc tactgctgct gctgctgcta ctgctttccc aggatatgct 2221 gtccctaatg caactgcacc cgtgtctgca gcccagctca agcaagcggt aacccttgga 2281 caagacttag cagcatatac aacctatgag gtctacccaa cttttgcagt gactgcccga 2341 ggggatggat atggcacctt ctgaAGATCC ACCGGATCTA GATAACTGAT CATAATCAGC 2401 CATACCACAT TTGTAGAGGT TTTACTTGCT TTAAAAAACC TCCCACACCT CCCCCTGAAC 2461 CTGAAACATA AAATGAATGC AATTGTTGTT GTTAACTTGT TTATTGCAGC TTATAATGGT 2521 TACAAATAAA GCAATAGCAT CACAAATTTC ACAAATAAAG CATTTTTTTC ACTGCATTCT 2581 AGTTGTGGTT TGTCCAAACT CATCAATGTA TCTTAACGCG TAAATTGTAA GCGTTAATAT 2641 TTTGTTAAAA TTCGCGTTAA ATTTTTGTTA AATCAGCTCA TTTTTTAACC AATAGGCCGA 2701 AATCGGCAAA ATCCCTTATA AATCAAAAGA ATAGACCGAG ATAGGGTTGA GTGTTGTTCC 2761 AGTTTGGAAC AAGAGTCCAC TATTAAAGAA CGTGGACTCC AACGTCAAAG GGCGAAAAAC 2821 CGTCTATCAG GGCGATGGCC CACTACGTGA ACCATCACCC TAATCAAGTT TTTTGGGGTC 2881 GAGGTGCCGT AAAGCACTAA ATCGGAACCC TAAAGGGAGC CCCCGATTTA GAGCTTGACG 2941 GGGAAAGCCG GCGAACGTGG CGAGAAAGGA AGGGAAGAAA GCGAAAGGAG CGGGCGCTAG 3001 GGCGCTGGCA AGTGTAGCGG TCACGCTGCG CGTAACCACC ACACCCGCCG CGCTTAATGC 3061 GCCGCTACAG GGCGCGTCAG GTGGCACTTT TCGGGGAAAT GTGCGCGGAA CCCCTATTTG 3121 TTTATTTTTC TAAATACATT CAAATATGTA TCCGCTCATG AGACAATAAC CCTGATAAAT 3181 GCTTCAATAA TATTGAAAAA GGAAGAGTCC TGAGGCGGAA AGAACCAGCT GTGGAATGTG 3241 TGTCAGTTAG GGTGTGGAAA GTCCCCAGGC TCCCCAGCAG GCAGAAGTAT GCAAAGCATG 3301 CATCTCAATT AGTCAGCAAC CAGGTGTGGA AAGTCCCCAG GCTCCCCAGC AGGCAGAAGT 3361 ATGCAAAGCA TGCATCTCAA TTAGTCAGCA ACCATAGTCC CGCCCCTAAC TCCGCCCATC 3421 CCGCCCCTAA CTCCGCCCAG TTCCGCCCAT TCTCCGCCCC ATGGCTGACT AATTTTTTTT 3481 ATTTATGCAG AGGCCGAGGC CGCCTCGGCC TCTGAGCTAT TCCAGAAGTA GTGAGGAGGC 3541 TTTTTTGGAG GCCTAGGCTT TTGCAAAGAT CGATCAAGAG ACAGGATGAG GATCGTTTCG 3601 CATGATTGAA CAAGATGGAT TGCACGCAGG TTCTCCGGCC GCTTGGGTGG AGAGGCTATT 3661 CGGCTATGAC TGGGCACAAC AGACAATCGG CTGCTCTGAT GCCGCCGTGT TCCGGCTGTC 3721 AGCGCAGGGG CGCCCGGTTC TTTTTGTCAA GACCGACCTG TCCGGTGCCC TGAATGAACT 3781 GCAAGACGAG GCAGCGCGGC TATCGTGGCT GGCCACGACG GGCGTTCCTT GCGCAGCTGT 3841 GCTCGACGTT GTCACTGAAG CGGGAAGGGA CTGGCTGCTA TTGGGCGAAG TGCCGGGGCA 3901 GGATCTCCTG TCATCTCACC TTGCTCCTGC CGAGAAAGTA TCCATCATGG CTGATGCAAT 3961 GCGGCGGCTG CATACGCTTG ATCCGGCTAC CTGCCCATTC GACCACCAAG CGAAACATCG 4021 CATCGAGCGA GCACGTACTC GGATGGAAGC CGGTCTTGTC GATCAGGATG ATCTGGACGA 4081 AGAGCATCAG GGGCTCGCGC CAGCCGAACT GTTCGCCAGG CTCAAGGCGA GCATGCCCGA 4141 CGGCGAGGAT CTCGTCGTGA CCCATGGCGA TGCCTGCTTG CCGAATATCA TGGTGGAAAA 4201 TGGCCGCTTT TCTGGATTCA TCGACTGTGG CCGGCTGGGT GTGGCGGACC GCTATCAGGA 4261 CATAGCGTTG GCTACCCGTG ATATTGCTGA AGAGCTTGGC GGCGAATGGG CTGACCGCTT 4321 CCTCGTGCTT TACGGTATCG CCGCTCCCGA TTCGCAGCGC ATCGCCTTCT ATCGCCTTCT 4381 TGACGAGTTC TTCTGAGCGG GACTCTGGGG TTCGAAATGA CCGACCAAGC GACGCCCAAC 4441 CTGCCATCAC GAGATTTCGA TTCCACCGCC GCCTTCTATG AAAGGTTGGG CTTCGGAATC 4501 GTTTTCCGGG ACGCCGGCTG GATGATCCTC CAGCGCGGGG ATCTCATGCT GGAGTTCTTC 4561 GCCCACCCTA GGGGGAGGCT AACTGAAACA CGGAAGGAGA CAATACCGGA AGGAACCCGC 4621 GCTATGACGG CAATAAAAAG ACAGAATAAA ACGCACGGTG TTGGGTCGTT TGTTCATAAA 4681 CGCGGGGTTC GGTCCCAGGG CTGGCACTCT GTCGATACCC CACCGAGACC CCATTGGGGC 4741 CAATACGCCC GCGTTTCTTC CTTTTCCCCA CCCCACCCCC CAAGTTCGGG TGAAGGCCCA 4801 GGGCTCGCAG CCAACGTCGG GGCGGCAGGC CCTGCCATAG CCTCAGGTTA CTCATATATA 4861 CTTTAGATTG ATTTAAAACT TCATTTTTAA TTTAAAAGGA TCTAGGTGAA GATCCTTTTT 4921 GATAATCTCA TGACCAAAAT CCCTTAACGT GAGTTTTCGT TCCACTGAGC GTCAGACCCC 4981 GTAGAAAAGA TCAAAGGATC TTCTTGAGAT CCTTTTTTTC TGCGCGTAAT CTGCTGCTTG 5041 CAAACAAAAA AACCACCGCT ACCAGCGGTG GTTTGTTTGC CGGATCAAGA GCTACCAACT 5101 CTTTTTCCGA AGGTAACTGG CTTCAGCAGA GCGCAGATAC CAAATACTGT CCTTCTAGTG 5161 TAGCCGTAGT TAGGCCACCA CTTCAAGAAC TCTGTAGCAC CGCCTACATA CCTCGCTCTG 5221 CTAATCCTGT TACCAGTGGC TGCTGCCAGT GGCGATAAGT CGTGTCTTAC CGGGTTGGAC 5281 TCAAGACGAT AGTTACCGGA TAAGGCGCAG CGGTCGGGCT GAACGGGGGG TTCGTGCACA 5341 CAGCCCAGCT TGGAGCGAAC GACCTACACC GAACTGAGAT ACCTACAGCG TGAGCTATGA 5401 GAAAGCGCCA CGCTTCCCGA AGGGAGAAAG GCGGACAGGT ATCCGGTAAG CGGCAGGGTC 5461 GGAACAGGAG AGCGCACGAG GGAGCTTCCA GGGGGAAACG CCTGGTATCT TTATAGTCCT 5521 GTCGGGTTTC GCCACCTCTG ACTTGAGCGT CGATTTTTGT GATGCTCGTC AGGGGGGCGG 5581 AGCCTATGGA AAAACGCCAG CAACGCGGCC TTTTTACGGT TCCTGGCCTT TTGCTGGCCT 5641 TTTGCTCACA TGTTCTTTCC TGCGTTATCC CCTGATTCTG TGGATAACCG TATTACCGCC 5701 ATGCAT //