LOCUS       2743_pLenti-h.Rh        7745 bp DNA     circular SYN 20-NOV-2023
DEFINITION  .
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 7745)
  AUTHORS   SKI
  TITLE     Direct Submission
  JOURNAL   Exported Nov 20, 2023 from SnapGene 7.0.3
            https://www.snapgene.com
FEATURES             Location/Qualifiers
     source          1..7745
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     enhancer        237..616
                     /label=CMV enhancer
                     /note="human cytomegalovirus immediate early enhancer"
                     /note="color: #ffffff"
     promoter        618..816
                     /label=CMV promoter
                     /note="human cytomegalovirus (CMV) immediate early 
                     promoter"
                     /note="color: #ffffff; direction: RIGHT"
     LTR             834..1014
                     /label=5' LTR (truncated)
                     /note="truncated 5' long terminal repeat (LTR) from HIV-1"
                     /note="color: #ffe4c4"
     misc_feature    1061..1186
                     /label=HIV-1 Psi
                     /note="packaging signal of human immunodeficiency virus 
                     type 1"
                     /note="color: #ffe4c4"
     misc_feature    1683..1916
                     /label=RRE
                     /note="The Rev response element (RRE) of HIV-1 allows for 
                     Rev-dependent mRNA export from the nucleus to the 
                     cytoplasm."
                     /note="color: #ffe4c4"
     CDS             2101..2145
                     /codon_start=1
                     /product="antigenic peptide corresponding to amino acids 
                     655 to 669 of the HIV envelope protein gp41 (Lutje Hulsik 
                     et al., 2013)"
                     /label=gp41 peptide
                     /note="recognized by the 2H10 single-chain llama nanobody"
                     /note="color: #cc99b2"
                     /translation="KNEQELLELDKWASL"
     misc_feature    2443..2560
                     /label=cPPT/CTS
                     /note="central polypurine tract and central termination 
                     sequence of HIV-1"
                     /note="color: #ffe4c4"
     enhancer        2643..3022
                     /label=CMV enhancer
                     /note="human cytomegalovirus immediate early enhancer"
                     /note="color: #ffffff"
     promoter        3023..3226
                     /label=CMV promoter
                     /note="human cytomegalovirus (CMV) immediate early 
                     promoter"
                     /note="color: #ffffff; direction: RIGHT"
     promoter        3252..3270
                     /label=T7 promoter
                     /note="promoter for bacteriophage T7 RNA polymerase"
                     /note="color: #ffffff; direction: RIGHT"
     primer_bind     complement(3309..3328)
                     /label=pLENTI_delWTRhino_REV
                     /note="color: black; sequence: GGCGATCGCGGCGGCAGATC; added:
                     2022-07-01"
     primer_bind     3328..3350
                     /label=EcoRI_Rhno1_FWD
                     /note="color: black; sequence: 
                     TTTTGAATTCATGCCTCCCAGAAAAAAACGCC; added: 2022-05-10"
     CDS             3329..4042
                     /codon_start=1
                     /label=hRhno1
                     /note="color: #339966"
                     /translation="MPPRKKRRQPSQKAPLLFHQQPLEGPKHSCASTQLPITHTRQVPS
                     KPIDHSTITSWVSPDFDTAAGSLFPAYQKHQNRARHSSRKPTTSKFPHLTFESPQSSSS
                     ETLGIPLIRECPSESEKDVSRRPLVPVLSPQSCGNMSVQALQSLPYVFIPPDIQTPESS
                     SVKEELIPQDQKENSLLSCTLHTGTPNSPEPGPVLVKDAPEDKYGIKVTWRRRQHLLAY
                     LRERGKLSRSQFLVKS"
     misc_feature    3470..3490
                     /label=Plk1 site
                     /note="color: #00ffff"
     misc_feature    3491..3511
                     /label=911 binding
                     /note="color: #ffff00"
     primer_bind     3521..3540
                     /label=InF_hRHNO1delta911_F
                     /note="color: black; sequence: 
                     AAGAAAGAGAGGATCCGCAGGAAGCTTGTTCCCAGC; added: 2022-02-07"
     misc_feature    3698..3724
                     /label=D-BOX
                     /note="color: #ff00ff"
     misc_feature    3740..3760
                     /label=Plk1 site
                     /note="color: #00ffff"
     primer_bind     complement(3741..3760)
                     /label=hRHNO1_144_R
                     /note="color: black; sequence: 
                     GATATCTGCAGAATTCTTATGCCTGCACTGACATGTTCC; added: 2022-02-07"
     misc_feature    3806..3826
                     /label=Plk1 site
                     /note="color: #00ffff"
     misc_feature    3848..3865
                     /label=KEN-BOX
                     /note="color: #ff00ff"
     misc_feature    3851..3871
                     /label=Plk1 site
                     /note="color: #00ffff"
     primer_bind     complement(3907..3925)
                     /label=hRHNO1_deltaTOPBP1_R
                     /note="color: black; sequence: 
                     GATATCTGCAGAATTCTTAAACCAGAACAGGTCCAGGC; added: 2022-02-07"
     misc_feature    3923..3946
                     /label=Cdk site
                     /note="color: #ff9900"
     misc_feature    3932..3934
                     /label=TOPBP1 binding
                     /note="color: #333399"
     primer_bind     complement(4023..4048)
                     /label=hRHNO1_MluI_R
                     /note="color: black; sequence: ACGCGTGCTTTTCACAAGGAATTGGC; 
                     added: 2022-05-09"
     primer_bind     4043..4060
                     /label=pLENTI_delWTRhino_FWD
                     /note="color: black; sequence: ACGCGTACGCGGCCGCTC; added: 
                     2022-07-01"
     CDS             4061..4090
                     /codon_start=1
                     /product="Myc (human c-Myc proto-oncogene) epitope tag"
                     /label=Myc
                     /note="color: #cc99b2"
                     /translation="EQKLISEEDL"
     primer_bind     complement(4084..4108)
                     /label=Rhno1_deltaFLAG_R
                     /note="color: black; sequence: CAGGATATCATTTGCTGCCAGATCC; 
                     added: 2022-04-14"
     primer_bind     4109..4131
                     /label=Rhno1_deltaFLAG_F
                     /note="color: black; sequence: GTTTGGGTAGGAAGCGGAGCTAC; 
                     added: 2022-04-14"
     CDS             4127..4183
                     /codon_start=1
                     /product="2A peptide from porcine teschovirus-1 
                     polyprotein"
                     /label=P2A
                     /note="Eukaryotic ribosomes fail to insert a peptide bond 
                     between the Gly and Pro residues, yielding separate 
                     polypeptides."
                     /note="color: #cc99b2
                     Cleavage site after base 4180"
                     /translation="ATNFSLLKQAGDVEENPGP"
     CDS             4184..4783
                     /codon_start=1
                     /gene="pac from Streptomyces alboniger"
                     /product="puromycin N-acetyltransferase"
                     /label=PuroR
                     /note="confers resistance to puromycin"
                     /note="color: #ccffcc"
                     /translation="MTEYKPTVRLATRDDVPRAVRTLAAAFADYPATRHTVDPDRHIER
                     VTELQELFLTRVGLDIGKVWVADDGAAVAVWTTPESVEAGAVFAEIGPRMAELSGSRLA
                     AQQQMEGLLAPHRPKEPAWFLATVGVSPDHQGKGLGSAVVLPGVEAAERAGVPAFLETS
                     APRNLPFYERLGFTVTADVEVPEGPRTWCMTRKPGA"
     protein_bind    4840..4873
                     /label=loxP
                     /bound_moiety="Cre recombinase"
                     /note="Cre-mediated recombination occurs in the 8-bp core 
                     sequence (GCATACAT)."
                     /note="color: #31849b; direction: RIGHT"
     misc_feature    4929..5517
                     /label=WPRE
                     /note="woodchuck hepatitis virus posttranscriptional 
                     regulatory element"
                     /note="color: #ffffff"
     CDS             complement(5400..5411)
                     /codon_start=1
                     /product="Factor Xa recognition and cleavage site"
                     /label=Factor Xa site
                     /note="color: #cc99b2
                     Cleavage site after base 5399"
                     /translation="IEGR"
     primer_bind     complement(5520..5536)
                     /label=KS primer
                     /note="common sequencing primer, one of multiple similar 
                     variants"
                     /note="color: #a020f0; direction: LEFT"
     LTR             6046..6226
                     /label=5' LTR (truncated)
                     /note="truncated 5' long terminal repeat (LTR) from HIV-1"
                     /note="color: #ffe4c4"
     rep_origin      complement(6288..6876)
                     /direction=LEFT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
                     /note="color: #ffff00"
     CDS             complement(6953..7612)
                     /codon_start=1
                     /gene="cat"
                     /product="chloramphenicol acetyltransferase"
                     /label=CmR
                     /note="confers resistance to chloramphenicol"
                     /note="color: #ccffcc"
                     /translation="MEKKITGYTTVDISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFL
                     KTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSS
                     LWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANM
                     DNFFAPVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQGGA"
     promoter        complement(7613..7717)
                     /gene="bla"
                     /label=AmpR promoter
                     /note="color: #ffffff; direction: LEFT"
ORIGIN
        1 gtcgacggat cgggagatct cccgatcccc tatggtgcac tctcagtaca atctgctctg
       61 atgccgcata gttaagccag tatctgctcc ctgcttgtgt gttggaggtc gctgagtagt
      121 gcgcgagcaa aatttaagct acaacaaggc aaggcttgac cgacaattgc atgaagaatc
      181 tgcttagggt taggcgtttt gcgctgcttc gcgatgtacg ggccagatat cgcgttgaca
      241 ttgattattg actagttatt aatagtaatc aattacgggg tcattagttc atagcccata
      301 tatggagttc cgcgttacat aacttacggt aaatggcccg cctggctgac cgcccaacga
      361 cccccgccca ttgacgtcaa taatgacgta tgttcccata gtaacgccaa tagggacttt
      421 ccattgacgt caatgggtgg agtatttacg gtaaactgcc cacttggcag tacatcaagt
      481 gtatcatatg ccaagtacgc cccctattga cgtcaatgac ggtaaatggc ccgcctggca
      541 ttatgcccag tacatgacct tatgggactt tcctacttgg cagtacatct acgtattagt
      601 catcgctatt accatggtga tgcggttttg gcagtacatc aatgggcgtg gatagcggtt
      661 tgactcacgg ggatttccaa gtctccaccc cattgacgtc aatgggagtt tgttttggca
      721 ccaaaatcaa cgggactttc caaaatgtcg taacaactcc gccccattga cgcaaatggg
      781 cggtaggcgt gtacggtggg aggtctatat aagcagcgcg ttttgcctgt actgggtctc
      841 tctggttaga ccagatctga gcctgggagc tctctggcta actagggaac ccactgctta
      901 agcctcaata aagcttgcct tgagtgcttc aagtagtgtg tgcccgtctg ttgtgtgact
      961 ctggtaacta gagatccctc agaccctttt agtcagtgtg gaaaatctct agcagtggcg
     1021 cccgaacagg gacttgaaag cgaaagggaa accagaggag ctctctcgac gcaggactcg
     1081 gcttgctgaa gcgcgcacgg caagaggcga ggggcggcga ctggtgagta cgccaaaaat
     1141 tttgactagc ggaggctaga aggagagaga tgggtgcgag agcgtcagta ttaagcgggg
     1201 gagaattaga tcgcgatggg aaaaaattcg gttaaggcca gggggaaaga aaaaatataa
     1261 attaaaacat atagtatggg caagcaggga gctagaacga ttcgcagtta atcctggcct
     1321 gttagaaaca tcagaaggct gtagacaaat actgggacag ctacaaccat cccttcagac
     1381 aggatcagaa gaacttagat cattatataa tacagtagca accctctatt gtgtgcatca
     1441 aaggatagag ataaaagaca ccaaggaagc tttagacaag atagaggaag agcaaaacaa
     1501 aagtaagacc accgcacagc aagcggccgg ccgctgatct tcagacctgg aggaggagat
     1561 atgagggaca attggagaag tgaattatat aaatataaag tagtaaaaat tgaaccatta
     1621 ggagtagcac ccaccaaggc aaagagaaga gtggtgcaga gagaaaaaag agcagtggga
     1681 ataggagctt tgttccttgg gttcttggga gcagcaggaa gcactatggg cgcagcgtca
     1741 atgacgctga cggtacaggc cagacaatta ttgtctggta tagtgcagca gcagaacaat
     1801 ttgctgaggg ctattgaggc gcaacagcat ctgttgcaac tcacagtctg gggcatcaag
     1861 cagctccagg caagaatcct ggctgtggaa agatacctaa aggatcaaca gctcctgggg
     1921 atttggggtt gctctggaaa actcatttgc accactgctg tgccttggaa tgctagttgg
     1981 agtaataaat ctctggaaca gatttggaat cacacgacct ggatggagtg ggacagagaa
     2041 attaacaatt acacaagctt aatacactcc ttaattgaag aatcgcaaaa ccagcaagaa
     2101 aagaatgaac aagaattatt ggaattagat aaatgggcaa gtttgtggaa ttggtttaac
     2161 ataacaaatt ggctgtggta tataaaatta ttcataatga tagtaggagg cttggtaggt
     2221 ttaagaatag tttttgctgt actttctata gtgaatagag ttaggcaggg atattcacca
     2281 ttatcgtttc agacccacct cccaaccccg aggggacccg acaggcccga aggaatagaa
     2341 gaagaaggtg gagagagaga cagagacaga tccattcgat tagtgaacgg atcggcactg
     2401 cgtgcgccaa ttctgcagac aaatggcagt attcatccac aattttaaaa gaaaaggggg
     2461 gattgggggg tacagtgcag gggaaagaat agtagacata atagcaacag acatacaaac
     2521 taaagaatta caaaaacaaa ttacaaaaat tcaaaatttt cgggtttatt acagggacag
     2581 cagagatcca gtttggttag taccgggccc gctctagaca tgtccaatat gaccgccatg
     2641 ttgacattga ttattgacta gttattaata gtaatcaatt acggggtcat tagttcatag
     2701 cccatatatg gagttccgcg ttacataact tacggtaaat ggcccgcctg gctgaccgcc
     2761 caacgacccc cgcccattga cgtcaataat gacgtatgtt cccatagtaa cgccaatagg
     2821 gactttccat tgacgtcaat gggtggagta tttacggtaa actgcccact tggcagtaca
     2881 tcaagtgtat catatgccaa gtccgccccc tattgacgtc aatgacggta aatggcccgc
     2941 ctggcattat gcccagtaca tgaccttacg ggactttcct acttggcagt acatctacgt
     3001 attagtcatc gctattacca tggtgatgcg gttttggcag tacaccaatg ggcgtggata
     3061 gcggtttgac tcacggggat ttccaagtct ccaccccatt gacgtcaatg ggagtttgtt
     3121 ttggcaccaa aatcaacggg actttccaaa atgtcgtaat aaccccgccc cgttgacgca
     3181 aatgggcggt aggcgtgtac ggtgggaggt ctatataagc agagctcgtt tagtgaaccg
     3241 tcagaatttt gtaatacgac tcactatagg gcggccggga attcgtcgac tggatccggt
     3301 accgaggaga tctgccgccg cgatcgccat gcctcccaga aaaaaacgcc gccagccttc
     3361 ccagaaagcc ccgctgctgt tccaccaaca accactggag ggccccaaac acagctgtgc
     3421 atctacacag cttcccatca ctcacactcg acaggtgccc agcaagccca ttgaccacag
     3481 caccatcact tcctgggtat cacctgattt tgatacagca gcaggaagct tgttcccagc
     3541 ctaccagaaa caccaaaacc gggcgagaca ctcaagtcga aaacctacca cctccaagtt
     3601 tccacatcta acttttgaga gtccgcaatc ttccagttca gagacattgg ggatcccctt
     3661 aatccgagag tgccccagtg aatcagaaaa ggatgtttcc agaagaccct tagttccagt
     3721 gctcagtccc caaagctgtg ggaacatgtc agtgcaggca cttcagagct taccttatgt
     3781 gttcattcca cctgatatcc agaccccaga gtcatcatct gtgaaggaag aactcattcc
     3841 ccaagatcag aaggaaaaca gccttctaag ctgcactctt cacactggca ctcctaatag
     3901 cccagagcct ggacctgttc tggttaaaga cgcccccgag gacaagtatg gaataaaggt
     3961 cacatggagg agacgacagc acctgcttgc ttacctcagg gagagaggga agctgagcag
     4021 aagccaattc cttgtgaaaa gcacgcgtac gcggccgctc gagcagaaac tcatctcaga
     4081 agaggatctg gcagcaaatg atatcctggt ttgggtagga agcggagcta ctaacttcag
     4141 cctgctgaag caggctggag acgtggagga gaaccctgga cctatgaccg agtacaagcc
     4201 cacggtgcgc ctcgccaccc gcgacgacgt ccccagggcc gtacgcaccc tcgccgccgc
     4261 gttcgccgac taccccgcca cgcgccacac cgtcgatccg gatcgccaca tcgagcgggt
     4321 caccgagctg caagaactct tcctcacgcg cgtcgggctc gacatcggca aggtgtgggt
     4381 cgcggacgac ggcgccgcgg tggcggtctg gaccacgccg gagagcgtcg aagcgggggc
     4441 ggtgttcgcc gagatcggcc cgcgcatggc cgagttgagc ggttcccggc tggccgcgca
     4501 gcaacagatg gaaggcctcc tggcgccgca ccggcccaag gagcccgcgt ggttcctggc
     4561 caccgtcggc gtctcgcccg accaccaggg caagggtctg ggcagcgccg tcgtgctccc
     4621 cggagtggag gcggccgagc gcgccggggt gcccgccttc ctggagacct ccgcgccccg
     4681 caacctcccc ttctacgagc ggctcggctt caccgtcacc gccgacgtcg aggtgcccga
     4741 aggaccgcgc acctggtgca tgacccgcaa gcccggtgcc tgatgtacac ccaaacggcc
     4801 ggccgcggtc tgtacaagta ggattcgtcg agggacctaa taacttcgta tagcatacat
     4861 tatacgaagt tatacatgtt taagggttcc ggttccacta ggtacaattc gatatcaagc
     4921 ttatcgataa tcaacctctg gattacaaaa tttgtgaaag attgactggt attcttaact
     4981 atgttgctcc ttttacgcta tgtggatacg ctgctttaat gcctttgtat catgctattg
     5041 cttcccgtat ggctttcatt ttctcctcct tgtataaatc ctggttgctg tctctttatg
     5101 aggagttgtg gcccgttgtc aggcaacgtg gcgtggtgtg cactgtgttt gctgacgcaa
     5161 cccccactgg ttggggcatt gccaccacct gtcagctcct ttccgggact ttcgctttcc
     5221 ccctccctat tgccacggcg gaactcatcg ccgcctgcct tgcccgctgc tggacagggg
     5281 ctcggctgtt gggcactgac aattccgtgg tgttgtcggg gaaatcatcg tcctttcctt
     5341 ggctgctcgc ctgtgttgcc acctggattc tgcgcgggac gtccttctgc tacgtccctt
     5401 cggccctcaa tccagcggac cttccttccc gcggcctgct gccggctctg cggcctcttc
     5461 cgcgtcttcg ccttcgccct cagacgagtc ggatctccct ttgggccgcc tccccgcatc
     5521 gataccgtcg acctcgatcg agacctagaa aaacatggag caatcacaag tagcaataca
     5581 gcagctacca atgctgattg tgcctggcta gaagcacaag aggaggagga ggtgggtttt
     5641 ccagtcacac ctcaggtacc tttaagacca atgacttaca aggcagctgt agatcttagc
     5701 cactttttaa aagaaaaggg gggactggaa gggctaattc actcccaacg aagacaagat
     5761 atccttgatc tgtggatcta ccacacacaa ggctacttcc ctgattggca gaactacaca
     5821 ccagggccag ggatcagata tccactgacc tttggatggt gctacaagct agtaccagtt
     5881 gagcaagaga aggtagaaga agccaatgaa ggagagaaca cccgcttgtt acaccctgtg
     5941 agcctgcatg ggatggatga cccggagaga gaagtattag agtggaggtt tgacagccgc
     6001 ctagcatttc atcacatggc ccgagagctg catccggact gtactgggtc tctctggtta
     6061 gaccagatct gagcctggga gctctctggc taactaggga acccactgct taagcctcaa
     6121 taaagcttgc cttgagtgct tcaagtagtg tgtgcccgtc tgttgtgtga ctctggtaac
     6181 tagagatccc tcagaccctt ttagtcagtg tggaaaatct ctagcagcat gtgagcaaaa
     6241 ggccagcaaa aggccaggaa ccgtaaaaag gccgcgttgc tggcgttttt ccataggctc
     6301 cgcccccctg acgagcatca caaaaatcga cgctcaagtc agaggtggcg aaacccgaca
     6361 ggactataaa gataccaggc gtttccccct ggaagctccc tcgtgcgctc tcctgttccg
     6421 accctgccgc ttaccggata cctgtccgcc tttctccctt cgggaagcgt ggcgctttct
     6481 catagctcac gctgtaggta tctcagttcg gtgtaggtcg ttcgctccaa gctgggctgt
     6541 gtgcacgaac cccccgttca gcccgaccgc tgcgccttat ccggtaacta tcgtcttgag
     6601 tccaacccgg taagacacga cttatcgcca ctggcagcag ccactggtaa caggattagc
     6661 agagcgaggt atgtaggcgg tgctacagag ttcttgaagt ggtggcctaa ctacggctac
     6721 actagaagaa cagtatttgg tatctgcgct ctgctgaagc cagttacctt cggaaaaaga
     6781 gttggtagct cttgatccgg caaacaaacc accgctggta gcggtggttt ttttgtttgc
     6841 aagcagcaga ttacgcgcag aaaaaaagga tctcaagaag atcctttgat cttttctacg
     6901 gggtctgacg ctcagtggaa cgaaaactca cgttaaggga ttttggtcat gattacgccc
     6961 cgccctgcca ctcatcgcag tactgttgta attcattaag cattctgccg acatggaagc
     7021 catcacaaac ggcatgatga acctgaatcg ccagcggcat cagcaccttg tcgccttgcg
     7081 tataatattt gcccatggtg aaaacggggg cgaagaagtt gtccatattg gccacgttta
     7141 aatcaaaact ggtgaaactc acccagggat tggctgagac gaaaaacata ttctcaataa
     7201 accctttagg gaaataggcc aggttttcac cgtaacacgc cacatcttgc gaatatatgt
     7261 gtagaaactg ccggaaatcg tcgtggtatt cactccagag cgatgaaaac gtttcagttt
     7321 gctcatggaa aacggtgtaa caagggtgaa cactatccca tatcaccagc tcaccgtctt
     7381 tcattgccat acggaactcc ggatgagcat tcatcaggcg ggcaagaatg tgaataaagg
     7441 ccggataaaa cttgtgctta tttttcttta cggtctttaa aaaggccgta atatccagct
     7501 gaacggtctg gttataggta cattgagcaa ctgactgaaa tgcctcaaaa tgttctttac
     7561 gatgccattg ggatatatca acggtggtat atccagtgat ttttttctcc atactcttcc
     7621 tttttcaata ttattgaagc atttatcagg gttattgtct catgagcgga tacatatttg
     7681 aatgtattta gaaaaataaa caaatagggg ttccgcgcac atttccccga aaagtgccac
     7741 ctgac
//
