LOCUS       pF_AA413        3040 bp DNA     circular SYN 14-MAR-2023
DEFINITION  synthetic circular DNA
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 3040)
  AUTHORS   GenScript
  TITLE     Direct Submission
  JOURNAL   Exported Dec 21, 2023 from SnapGene 7.1.1
            https://www.snapgene.com
FEATURES             Location/Qualifiers
     source          1..3040
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     misc_feature    432..443
                     /label=GG-2F
     CDS             457..459
                     /label=Start
     CDS             460..501
                     /codon_start=1
                     /product="epitope tag from simian virus 5"
                     /label=V5_v1.1
                     /translation="GKPIPNPLLGLDST"
     CDS             502..822
                     /codon_start=1
                     /product="F36V mutant of FK506-binding protein FKBP12
                     
                     From Addgene 185760"
                     /label=dTAG_v1.1
                     /note="binds synthetic ligands that do not bind wild-type 
                     FKBP"
                     /translation="GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKVDSSRDRNKP
                     FKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELL
                     KLE"
     misc_difference 532..534
                     /label=GAC -> GAC
     misc_difference 793..795
                     /label=GTC->GTG
     misc_difference 823..828
                     /label=MluI site
                     /note="From most maps of degron panel described by Bondeson
                     et al, Nat Commun. 2022. PMID: 36127368
                     Originally included by Bondeson et al as a MluI site for 
                     digestion verification purposes; preserved to maintain 
                     consistency, as it is in a coding region.
                     
                     "
     CDS             829..879
                     /product="Rigid linker used by Bondeson et al, Nat Commun. 
                     2022. PMID: 36127368
                     Original linker sequence (19 residues, AEAAAKEAAAKEAAAKAGS)
                     includes GS at 3' end; to avoid redundancy, removed GS 
                     because GPP's Module 3 Golden Gate overhangs already code 
                     for GS.
                     
                     "
                     /label=Degron-linker_v1.1
     misc_feature    880..892
                     /label=GG-3R
     CDS             880..885
                     /codon_start=1
                     /label=GS
                     /translation="GS"
     primer_bind     complement(950..966)
                     /label=M13 rev
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     protein_bind    974..990
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     promoter        complement(join(998..1004,1005..1022,1023..1028))
                     /label=lac promoter
                     /note="promoter for the E. coli lac operon"
     protein_bind    1043..1064
                     /label=CAP binding site
                     /bound_moiety="E. coli catabolite activator protein"
                     /note="CAP binding activates transcription in the presence 
                     of cAMP."
     rep_origin      complement(1352..1940)
                     /direction=LEFT
                     /label=ori
                     /note="ori"
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     CDS             complement(2118..2927)
                     /codon_start=1
                     /gene="aph(3')-Ia"
                     /product="aminoglycoside phosphotransferase"
                     /label=aph(3')-Ia
                     /note="KanR"
                     /note="confers resistance to kanamycin in bacteria or G418 
                     (Geneticin(R)) in eukaryotes"
                     /translation="MSHIQRETSRPRLNSNMDADLYGYKWARDNVGQSGATIYRLYGKP
                     DAPELFLKHGKGSVANDVTDEMVRLNWLTEFMPLPTIKHFIRTPDDAWLLTTAIPGKTA
                     FQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASD
                     FDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIAD
                     RYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF"
ORIGIN
        1 tcgcgcgttt cggtgatgac ggtgaaaacc tctgacacat gcagctcccg gagacggtca
       61 cagcttgtct gtaagcggat gccgggagca gacaagcccg tcagggcgcg tcagcgggtg
      121 ttggcgggtg tcggggctgg cttaactatg cggcatcaga gcagattgta ctgagagtgc
      181 accatatgcg gtgtgaaata ccgcacagat gcgtaaggag aaaataccgc atcaggcgcc
      241 attcgccatt caggctgcgc aactgttggg aagggcgatc ggtgcgggcc tcttcgctat
      301 tacgccagct ggcgaaaggg ggatgtgctg caaggcgatt aagttgggta acgccagggt
      361 tttcccagtc acgacgttgt aaaacgacgg ccagagaatt cgagctcggt acctcgcgaa
      421 tacatctaga tgaagacgta ggagagagcc gccaccatgg gtaagcctat ccctaaccct
      481 ctcctcggtc tcgattctac gggagtgcag gtggaaacca tctccccagg agatgggcgc
      541 accttcccca agcgcggcca gacctgcgtg gtgcactaca ccgggatgct tgaagatgga
      601 aagaaagttg attcctcccg ggacagaaac aagcccttta agtttatgct aggcaagcag
      661 gaggtgatcc gaggctggga agaaggggtt gcccagatga gtgtgggtca gagagccaaa
      721 ctgactatat ctccagatta tgcctatggt gccactgggc acccaggcat catcccacca
      781 catgccactc tcgtgttcga tgtggagctt ctaaaactgg aaacgcgtgc tgaagctgct
      841 gcaaaggaag ctgcagctaa ggaggctgca gctaaggctg gcagcagtct tcatcggatc
      901 ccgggcccgt cgactgcaga ggcctgcatg caagcttggt gtaatcatgg tcatagctgt
      961 ttcctgtgtg aaattgttat ccgctcacaa ttccacacaa catacgagcc ggaagcataa
     1021 agtgtaaagc ctggggtgcc taatgagtga gctaactcac attaattgcg ttgcgctcac
     1081 tgcccgcttt ccagtcggga aacctgtcgt gccagctgca ttaatgaatc ggccaacgcg
     1141 cggggagagg cggtttgcgt attgggcgct cttccgcttc ctcgctcact gactcgctgc
     1201 gctcggtcgt tcggctgcgg cgagcggtat cagctcactc aaaggcggta atacggttat
     1261 ccacagaatc aggggataac gcaggaaaga acatgtgagc aaaaggccag caaaaggcca
     1321 ggaaccgtaa aaaggccgcg ttgctggcgt ttttccatag gctccgcccc cctgacgagc
     1381 atcacaaaaa tcgacgctca agtcagaggt ggcgaaaccc gacaggacta taaagatacc
     1441 aggcgtttcc ccctggaagc tccctcgtgc gctctcctgt tccgaccctg ccgcttaccg
     1501 gatacctgtc cgcctttctc ccttcgggaa gcgtggcgct ttctcatagc tcacgctgta
     1561 ggtatctcag ttcggtgtag gtcgttcgct ccaagctggg ctgtgtgcac gaaccccccg
     1621 ttcagcccga ccgctgcgcc ttatccggta actatcgtct tgagtccaac ccggtaagac
     1681 acgacttatc gccactggca gcagccactg gtaacaggat tagcagagcg aggtatgtag
     1741 gcggtgctac agagttcttg aagtggtggc ctaactacgg ctacactaga agaacagtat
     1801 ttggtatctg cgctctgctg aagccagtta ccttcggaaa aagagttggt agctcttgat
     1861 ccggcaaaca aaccaccgct ggtagcggtg gtttttttgt ttgcaagcag cagattacgc
     1921 gcagaaaaaa aggatctcaa gaagatcctt tgatcttttc tacggggtct gacgctcagt
     1981 ggaacgaaaa ctcacgttaa gggattttgg tcatgagatt atcaaaaagg atcttcacct
     2041 agatcctttt aaattaaaaa tgaagtttta aatcaagccc aatctgaata atgttacaac
     2101 caattaacca attctgatta gaaaaactca tcgagcatca aatgaaactg caatttattc
     2161 atatcaggat tatcaatacc atatttttga aaaagccgtt tctgtaatga aggagaaaac
     2221 tcaccgaggc agttccatag gatggcaaga tcctggtatc ggtctgcgat tccgactcgt
     2281 ccaacatcaa tacaacctat taatttcccc tcgtcaaaaa taaggttatc aagtgagaaa
     2341 tcaccatgag tgacgactga atccggtgag aatggcaaaa gtttatgcat ttctttccag
     2401 acttgttcaa caggccagcc attacgctcg tcatcaaaat cactcgcatc aaccaaaccg
     2461 ttattcattc gtgattgcgc ctgagcgaga cgaaatacgc gatcgctgtt aaaaggacaa
     2521 ttacaaacag gaatcgaatg caaccggcgc aggaacactg ccagcgcatc aacaatattt
     2581 tcacctgaat caggatattc ttctaatacc tggaatgctg tttttccggg gatcgcagtg
     2641 gtgagtaacc atgcatcatc aggagtacgg ataaaatgct tgatggtcgg aagaggcata
     2701 aattccgtca gccagtttag tctgaccatc tcatctgtaa catcattggc aacgctacct
     2761 ttgccatgtt tcagaaacaa ctctggcgca tcgggcttcc catacaagcg atagattgtc
     2821 gcacctgatt gcccgacatt atcgcgagcc catttatacc catataaatc agcatccatg
     2881 ttggaattta atcgcggcct cgacgtttcc cgttgaatat ggctcataac accccttgta
     2941 ttactgttta tgtaagcaga cagttttatt gttcatgatg atatattttt atcttgtgca
     3001 atgtaacatc agagattttg agacacgggc cagagctgca
//
