LOCUS       pAAV-Ef1a-ArgiNLS-EGFP        5444 bp    DNA     circular UNA 29-APR-2024
DEFINITION  In the presence of Cre, the plasmid can be used to express GCaMP6s
            fused to the presynaptic protein synaptophysin. Drives enriched
            expression of GCaMP6s in neuronal axon boutons..
ACCESSION   urn.local...5hn-d70cuhj
VERSION     urn.local...5hn-d70cuhj
KEYWORDS    .
SOURCE      
  ORGANISM  .
COMMENT     ##Imported_From-START##
            Path     :: C:\Users\TheGoldenLab\Downloads
            Filename :: addgene-plasmid-105715-sequence-207274.dna
            ##Imported_From-END##
FEATURES             Location/Qualifiers
     repeat_region   1..130
                     /note="<html><body>Functional equivalent of wild-type AAV2
                     ITR</body></html>"
                     /label="AAV2 ITR (alternate)"
     promoter        231..1409
                     /note="<html><body>strong constitutive promoter for human
                     elongation factor EF-1α</body></html>"
                     /label="EF-1α promoter"
     promoter        250..461
                     /note="Gorilla gorilla gorilla eukaryotic translation
                     elongation factor 1 alpha 1 promoter"
                     /regulatory_class="promoter"
                     /note="Derived using Geneious Prime 2023.2.1 'Annotate
                     from Database' based on nucleotide similarity"
                     /Transferred_From="EF-1α core"
                     /Transferred_Similarity="100.00%"
                     /Primary_Match="100.00%; Adjusted-Interval-0:0/0; <a
                     href=""urn:local:.:1il-d70a9eu"">EF-1α core</a>"
                     /label="EF-1α core"
     primer_bind     1357..1377
                     /Tm=57
                     /Description="Human elongation factor-1a promoter, forward
                     primer"
                     /label="EF1a-F"
     primer_bind     1411..1430
                     /%GC="55.0"
                     /Hairpin_Tm="52.3"
                     /Self_Dimer_Tm="9.5"
                     /Tm="57.4"
                     /Sequence="GTACCGTACCGGATCCTCTA"
                     /created_by="primer3"
                     /Transferred_From="GL_5"
                     /Transferred_Similarity="100.00%"
                     /label="GL_5"
     sig_peptide     1442..1513
                     /created_by="TheGoldenLab"
                     /modified_by="ericszelenyi"
                     /label="ArgiNLS"
     misc_feature    1493..1507
                     /kind="tag"
                     /note="polyarginine tag used for protein purification (may
                     sometime have 6 R residues instead of 5)"
                     /Color="#FFFFB9"
                     /note="Derived using Geneious Prime 2023.2.1 'Annotate
                     from Database' based on protein similarity"
                     /Transferred_From="polyArg"
                     /Transferred_Translation_Similarity="100.00%"
                     /Primary_Match="100.00%; Adjusted-Interval-0:0/0; <a
                     href=""urn:local:.:1a6-d70a9ea"">polyArg</a>"
                     /Alternative_Match="100.00%; Adjusted-Interval-0:3/3; <a
                     href=""urn:local:.:1a6-d70a9ea"">polyArg</a>"
                     /label="polyArg"
     misc_feature    1493..1507
                     /kind="tag"
                     /note="polyarginine tag used for protein purification (may
                     sometime have 6 R residues instead of 5)"
                     /Color="#FFFFB9"
                     /note="Derived using Geneious Prime 2023.2.1 'Annotate
                     from Database' based on protein similarity"
                     /Transferred_From="polyArg"
                     /Transferred_Translation_Similarity="100.00%"
                     /Primary_Match="100.00%; Adjusted-Interval-0:0/0; <a
                     href=""urn:local:.:1a6-d70a9ea"">polyArg</a>"
                     /label="polyArg"
     misc_feature    1496..1510
                     /kind="tag"
                     /note="polyarginine tag used for protein purification (may
                     sometime have 6 R residues instead of 5)"
                     /Color="#FFFFB9"
                     /note="Derived using Geneious Prime 2023.2.1 'Annotate
                     from Database' based on protein similarity"
                     /Transferred_From="polyArg"
                     /Transferred_Translation_Similarity="100.00%"
                     /Primary_Match="100.00%; Adjusted-Interval-0:0/0; <a
                     href=""urn:local:.:1a6-d70a9ea"">polyArg</a>"
                     /label="polyArg"
     misc_feature    complement(1498..1512)
                     /kind="tag"
                     /note="polyarginine tag used for protein purification (may
                     sometime have 6 R residues instead of 5)"
                     /Color="#FFFFB9"
                     /note="Derived using Geneious Prime 2023.2.1 'Annotate
                     from Database' based on protein similarity"
                     /Transferred_From="polyArg"
                     /Transferred_Translation_Similarity="100.00%"
                     /Primary_Match="100.00%; Adjusted-Interval-0:0/0; <a
                     href=""urn:local:.:1a6-d70a9ea"">polyArg</a>"
                     /label="polyArg"
     misc_feature    1499..1513
                     /kind="tag"
                     /note="polyarginine tag used for protein purification (may
                     sometime have 6 R residues instead of 5)"
                     /Color="#FFFFB9"
                     /note="Derived using Geneious Prime 2023.2.1 'Annotate
                     from Database' based on protein similarity"
                     /Transferred_From="polyArg"
                     /Transferred_Translation_Similarity="100.00%"
                     /Primary_Match="100.00%; Adjusted-Interval-0:0/0; <a
                     href=""urn:local:.:1a6-d70a9ea"">polyArg</a>"
                     /label="polyArg"
     CDS             1514..2227
                     /created_by="TheGoldenLab"
                     /label="EGFP"
     primer_bind     complement(1881..1899)
                     /%GC="57.9"
                     /Hairpin_Tm="38.9"
                     /Self_Dimer_Tm="None"
                     /Tm="61.1"
                     /Sequence="TCGATGCCCTTCAGCTCGA"
                     /created_by="primer3"
                     /Transferred_From="GL_2"
                     /Transferred_Similarity="100.00%"
                     /label="GL_2"
     primer_bind     1906..1924
                     /%GC="63.2"
                     /Hairpin_Tm="45.7"
                     /Self_Dimer_Tm="None"
                     /Tm="60.5"
                     /Sequence="GGAGGACGGCAACATCCTG"
                     /created_by="primer3"
                     /Transferred_From="GL_24"
                     /Transferred_Similarity="100.00%"
                     /label="GL_24"
     unsure          2231..2236
                     /created_by="TheGoldenLab"
                     /modified_by="TheGoldenLab"
                     /label="EcoRV-2"
     primer_bind     complement(2245..2267)
                     /%GC="43.5"
                     /Hairpin_Tm="33.2"
                     /Self_Dimer_Tm="5.9"
                     /Tm="57.3"
                     /Sequence="ATCCAGAGGTTGATTATCTCGAG"
                     /created_by="primer3"
                     /Transferred_From="GL_23"
                     /Transferred_Similarity="100.00%"
                     /label="GL_23"
     misc_feature    2250..2494
                     /created_by="TheGoldenLab"
                     /modified_by="TheGoldenLab"
                     /label="WPRE3"
     primer_bind     complement(2306..2326)
                     /Tm=55
                     /Description="WPRE, reverse primer"
                     /label="WPRE-R"
     terminator      2494..2615
                     /created_by="TheGoldenLab"
                     /label="SV40 pA"
     misc_feature    2611..2616
                     /created_by="TheGoldenLab"
                     /label="HpaI"
     misc_feature    2622..2627
                     /created_by="TheGoldenLab"
                     /label="MfeI"
     repeat_region   2708..2837
                     /label="AAV2 ITR"
     repeat_region   2708..2848
                     /note="adeno-associated virus (AAV-2) inverted terminal
                     repeat (ITR) region required for genome multiplication"
                     /note="Derived using Geneious Prime 2023.2.1 'Annotate
                     from Database' based on nucleotide similarity"
                     /Transferred_From="AAV2 ITR"
                     /Transferred_Similarity="100.00%"
                     /Primary_Match="100.00%; Adjusted-Interval-0:0/0; <a
                     href=""urn:local:.:2j5-d70a9h9"">AAV2 ITR</a>"
                     /label="AAV2 ITR"
     rep_origin      2923..3378
                     /direction="RIGHT"
                     /note="<html><body>f1 bacteriophage origin of replication;
                     arrow indicates direction of (+) strand
                     synthesis</body></html>"
                     /label="f1 ori"
     primer_bind     complement(3010..3029)
                     /Tm=57
                     /Description="F1 origin, reverse primer"
                     /label="F1ori-R"
     primer_bind     3220..3241
                     /Tm=57
                     /Description="F1 origin, forward primer"
                     /label="F1ori-F"
     primer_bind     complement(3395..3414)
                     /Tm=54
                     /Description="pRS vectors, use to sequence yeast
                     selectable marker"
                     /label="pRS-marker"
     primer_bind     3514..3536
                     /Tm=66
                     /Description="pGEX vectors, reverse primer"
                     /label="pGEX 3'"
     primer_bind     complement(3574..3592)
                     /Tm=57
                     /Description="pBR322 vectors, upsteam of EcoRI site,
                     forward primer"
                     /label="pBRforEco"
     promoter        3660..3764
                     /gene="<html><body><i>bla</i></body></html>"
                     /label="AmpR promoter"
     promoter        3660..3764
                     /note="Promoter for ampicillin resistance gene
                     (b-lactamase)"
                     /regulatory_class="promoter"
                     /note="Derived using Geneious Prime 2023.2.1 'Annotate
                     from Database' based on nucleotide similarity"
                     /Transferred_From="amp"
                     /Transferred_Similarity="100.00%"
                     /Primary_Match="100.00%; Adjusted-Interval-0:0/0; <a
                     href=""urn:local:.:1g5-d70a9ep"">amp</a>"
                     /label="amp"
     Promoter        3695..3723
                     /Imported_from="<a
                     href=""http://wishart.biology.ualberta.ca/PlasMapper"">Pla
                     sMapper</a>"
                     /Transferred_From="amp prom"
                     /Transferred_Similarity="100.00%"
                     /label="amp prom"
     CDS             join(3765..3833,3834..4625)
                     /gene="<html><body><i>bla</i></body></html>"
                     /note="<html><body>confers resistance to ampicillin,
                     carbenicillin, and related antibiotics</body></html>"
                     /codon_start=1
                     /translation="MSIQHFRVALIPFFAAFCLPVFA,HPETLVKVKDAEDQLGARVG
                     YIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLV
                     EYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTR
                     LDRWEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGP
                     LLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQI
                     AEIGASLIKHW*"
                     /transl_table=1
                     /product="<html><body>β-lactamase</body></html>"
                     /label="AmpR"
     primer_bind     complement(3983..4002)
                     /Tm=58
                     /Description="Ampicillin resistance gene, reverse primer"
                     /label="Amp-R"
     rep_origin      4796..5383
                     /direction="RIGHT"
                     /note="<html><body>high-copy-number ColE1/pMB1/pBR322/pUC
                     origin of replication</body></html>"
                     /label="ori"
     primer_bind     5284..5303
                     /Tm=56
                     /Description="pBR322 origin, forward primer"
                     /label="pBR322ori-F"
ORIGIN      
        1 cctgcaggca gctgcgcgct cgctcgctca ctgaggccgc ccgggcgtcg ggcgaccttt
       61 ggtcgcccgg cctcagtgag cgagcgagcg cgcagagagg gagtggccaa ctccatcact
      121 aggggttcct gcggccgcac gcgtaagctt tgcaaagatg gataaagttt taaacagaga
      181 ggaatctttg cagctaatgg accttctagg tcttgaaagg agtgggaatt ggctccggtg
      241 cccgtcagtg ggcagagcgc acatcgccca cagtccccga gaagttgggg ggaggggtcg
      301 gcaattgaac cggtgcctag agaaggtggc gcggggtaaa ctgggaaagt gatgtcgtgt
      361 actggctccg cctttttccc gagggtgggg gagaaccgta tataagtgca gtagtcgccg
      421 tgaacgttct ttttcgcaac gggtttgccg ccagaacaca ggtaagtgcc gtgtgtggtt
      481 cccgcgggcc tggcctcttt acgggttatg gcccttgcgt gccttgaatt acttccacct
      541 ggctgcagta cgtgattctt gatcccgagc ttcgggttgg aagtgggtgg gagagttcga
      601 ggccttgcgc ttaaggagcc ccttcgcctc gtgcttgagt tgaggcctgg cctgggcgct
      661 ggggccgccg cgtgcgaatc tggtggcacc ttcgcgcctg tctcgctgct ttcgataagt
      721 ctctagccat ttaaaatttt tgatgacctg ctgcgacgct ttttttctgg caagatagtc
      781 ttgtaaatgc gggccaagat ctgcacactg gtatttcggt ttttggggcc gcgggcggcg
      841 acggggcccg tgcgtcccag cgcacatgtt cggcgaggcg gggcctgcga gcgcggccac
      901 cgagaatcgg acgggggtag tctcaagctg gccggcctgc tctggtgcct ggcctcgcgc
      961 cgccgtgtat cgccccgccc tgggcggcaa ggctggcccg gtcggcacca gttgcgtgag
     1021 cggaaagatg gccgcttccc ggccctgctg cagggagctc aaaatggagg acgcggcgct
     1081 cgggagagcg ggcgggtgag tcacccacac aaaggaaaag ggcctttccg tcctcagccg
     1141 tcgcttcatg tgactccacg gagtaccggg cgccgtccag gcacctcgat tagttctcga
     1201 gcttttggag tacgtcgtct ttaggttggg gggaggggtt ttatgcgatg gagtttcccc
     1261 acactgagtg ggtggagact gaagttaggc cagcttggca cttgatgtaa ttctccttgg
     1321 aatttgccct ttttgagttt ggatcttggt tcattctcaa gcctcagaca gtggttcaaa
     1381 gtttttttct tccatttcag gtgtcgtgag gtaccgtacc ggatcctcta gagccaccat
     1441 gaaaagggtg gctccccaga agcagatgag catagcaaag aaaaagaagg tgagaaggcg
     1501 gcggcgccgt cgagtgagca agggcgagga gctgttcacc ggggtggtgc ccatcctggt
     1561 cgagctggac ggcgacgtaa acggccacaa gttcagcgtg tccggcgagg gcgagggcga
     1621 tgccacctac ggcaagctga ccctgaagtt catttgcacc accggcaagc tgcccgtgcc
     1681 ctggcccacc ctcgtgacca ccctgaccta cggcgtgcag tgcttcagcc gctaccccga
     1741 ccacatgaag cagcacgact tcttcaagtc cgccatgccc gaaggctacg tccaggagcg
     1801 caccatcttc ttcaaggacg acggcaacta caagacccgc gccgaggtga agttcgaggg
     1861 cgacaccctg gtgaaccgca tcgagctgaa gggcatcgac ttcaaggagg acggcaacat
     1921 cctggggcac aagctggagt acaactacaa cagccacaac gtctatatca tggccgacaa
     1981 gcagaagaac ggcatcaagg tgaacttcaa gatccgccac aacatcgagg acggcagcgt
     2041 gcagctcgcc gaccactacc agcagaacac ccccatcggc gacggccccg tgctgctgcc
     2101 cgacaaccac tacctgagca cccagtccgc cctgagcaaa gaccccaacg agaagcgcga
     2161 tcacatggtc ctgctggagt tcgtgaccgc cgccgggatc actctcggca tggacgagct
     2221 gtacaagtag gatatcgaat tccgctcgag ataatcaacc tctggattac aaaatttgtg
     2281 aaagattgac tggtattctt aactatgttg ctccttttac gctatgtgga tacgctgctt
     2341 taatgccttt gtatcatgct attgcttccc gtatggcttt cattttctcc tccttgtata
     2401 aatcctggtt agttcttgcc acggcggaac tcatcgccgc ctgccttgcc cgctgctgga
     2461 caggggctcg gctgttgggc actgacaatt ccgtggtgtt tatttgtgaa atttgtgatg
     2521 ctattgcttt atttgtaacc atctagcttt atttgtgaaa tttgtgatgc tattgcttta
     2581 tttgtaacca ttataagctg caataaacaa gttaacaaca acaattgcat tcattttatg
     2641 tttcaggttc agggggagat gtgggaggtt ttttaaagcg gccgccacgt gcggaccgag
     2701 cggccgcagg aacccctagt gatggagttg gccactccct ctctgcgcgc tcgctcgctc
     2761 actgaggccg ggcgaccaaa ggtcgcccga cgcccgggct ttgcccgggc ggcctcagtg
     2821 agcgagcgag cgcgcagctg cctgcagggg cgcctgatgc ggtattttct ccttacgcat
     2881 ctgtgcggta tttcacaccg catacgtcaa agcaaccata gtacgcgccc tgtagcggcg
     2941 cattaagcgc ggcgggtgtg gtggttacgc gcagcgtgac cgctacactt gccagcgcct
     3001 tagcgcccgc tcctttcgct ttcttccctt cctttctcgc cacgttcgcc ggctttcccc
     3061 gtcaagctct aaatcggggg ctccctttag ggttccgatt tagtgcttta cggcacctcg
     3121 accccaaaaa acttgatttg ggtgatggtt cacgtagtgg gccatcgccc tgatagacgg
     3181 tttttcgccc tttgacgttg gagtccacgt tctttaatag tggactcttg ttccaaactg
     3241 gaacaacact caactctatc tcgggctatt cttttgattt ataagggatt ttgccgattt
     3301 cggtctattg gttaaaaaat gagctgattt aacaaaaatt taacgcgaat tttaacaaaa
     3361 tattaacgtt tacaatttta tggtgcactc tcagtacaat ctgctctgat gccgcatagt
     3421 taagccagcc ccgacacccg ccaacacccg ctgacgcgcc ctgacgggct tgtctgctcc
     3481 cggcatccgc ttacagacaa gctgtgaccg tctccgggag ctgcatgtgt cagaggtttt
     3541 caccgtcatc accgaaacgc gcgagacgaa agggcctcgt gatacgccta tttttatagg
     3601 ttaatgtcat gataataatg gtttcttaga cgtcaggtgg cacttttcgg ggaaatgtgc
     3661 gcggaacccc tatttgttta tttttctaaa tacattcaaa tatgtatccg ctcatgagac
     3721 aataaccctg ataaatgctt caataatatt gaaaaaggaa gagtatgagt attcaacatt
     3781 tccgtgtcgc ccttattccc ttttttgcgg cattttgcct tcctgttttt gctcacccag
     3841 aaacgctggt gaaagtaaaa gatgctgaag atcagttggg tgcacgagtg ggttacatcg
     3901 aactggatct caacagcggt aagatccttg agagttttcg ccccgaagaa cgttttccaa
     3961 tgatgagcac ttttaaagtt ctgctatgtg gcgcggtatt atcccgtatt gacgccgggc
     4021 aagagcaact cggtcgccgc atacactatt ctcagaatga cttggttgag tactcaccag
     4081 tcacagaaaa gcatcttacg gatggcatga cagtaagaga attatgcagt gctgccataa
     4141 ccatgagtga taacactgcg gccaacttac ttctgacaac gatcggagga ccgaaggagc
     4201 taaccgcttt tttgcacaac atgggggatc atgtaactcg ccttgatcgt tgggaaccgg
     4261 agctgaatga agccatacca aacgacgagc gtgacaccac gatgcctgta gcaatggcaa
     4321 caacgttgcg caaactatta actggcgaac tacttactct agcttcccgg caacaattaa
     4381 tagactggat ggaggcggat aaagttgcag gaccacttct gcgctcggcc cttccggctg
     4441 gctggtttat tgctgataaa tctggagccg gtgagcgtgg gtctcgcggt atcattgcag
     4501 cactggggcc agatggtaag ccctcccgta tcgtagttat ctacacgacg gggagtcagg
     4561 caactatgga tgaacgaaat agacagatcg ctgagatagg tgcctcactg attaagcatt
     4621 ggtaactgtc agaccaagtt tactcatata tactttagat tgatttaaaa cttcattttt
     4681 aatttaaaag gatctaggtg aagatccttt ttgataatct catgaccaaa atcccttaac
     4741 gtgagttttc gttccactga gcgtcagacc ccgtagaaaa gatcaaagga tcttcttgag
     4801 atcctttttt tctgcgcgta atctgctgct tgcaaacaaa aaaaccaccg ctaccagcgg
     4861 tggtttgttt gccggatcaa gagctaccaa ctctttttcc gaaggtaact ggcttcagca
     4921 gagcgcagat accaaatact gttcttctag tgtagccgta gttaggccac cacttcaaga
     4981 actctgtagc accgcctaca tacctcgctc tgctaatcct gttaccagtg gctgctgcca
     5041 gtggcgataa gtcgtgtctt accgggttgg actcaagacg atagttaccg gataaggcgc
     5101 agcggtcggg ctgaacgggg gttcgtgcac acagcccagc ttggagcgaa cgacctacac
     5161 cgaactgaga tacctacagc gtgagctatg agaaagcgcc acgcttcccg aagggagaaa
     5221 ggcggacagg tatccggtaa gcggcagggt cggaacagga gagcgcacga gggagcttcc
     5281 agggggaaac gcctggtatc tttatagtcc tgtcgggttt cgccacctct gacttgagcg
     5341 tcgatttttg tgatgctcgt caggggggcg gagcctatgg aaaaacgcca gcaacgcggc
     5401 ctttttacgg ttcctggcct tttgctggcc ttttgctcac atgt
//
