LOCUS       pmMBD2∆N∆CC-G_pc5089    5398 bp ds-DNA     circular     07-MAY-2025
DEFINITION  .
KEYWORDS    "marker:NeoR/KanR"
COMMENT     Annotated with pLannotate v1.2.1
FEATURES             Location/Qualifiers
     rep_origin      1..589
                     /label="ori"
                     /ApEinfo_revcolor="#ffff00"
                     /ApEinfo_fwdcolor="#ffff00"
                     /note="label: ori note: pLannotate note: /database=snapgene note: /fragment=False note: /identity=99.8 note: /match_length=100.0 note: /other=rep_origin"
     enhancer        764..1067
                     /label="CMV enhancer"
                     /ApEinfo_revcolor="#b4abac"
                     /ApEinfo_fwdcolor="#b4abac"
                     /note="label: CMV enhancer note: pLannotate note: /database=snapgene note: /fragment=False note: /identity=100.0 note: /match_length=100.0 note: /other=enhancer"
     promoter        1068..1271
                     /label="CMV promoter"
                     /ApEinfo_revcolor="#b7e6d7"
                     /ApEinfo_fwdcolor="#b7e6d7"
                     /note="label: CMV promoter note: pLannotate note: /database=snapgene note: /fragment=False note: /identity=100.0 note: /match_length=100.0 note: /other=promoter"
     misc_feature    1294..1348
                     /label="MCS (fragment)"
                     /ApEinfo_revcolor="#b4abac"
                     /ApEinfo_fwdcolor="#b4abac"
                     /note="label: MCS (fragment) note: pLannotate note: /database=snapgene note: /fragment=True note: /identity=100.0 note: /match_length=67.9 note: /other=misc_feature"
     CDS             1354..2010
                     /label="MBD2∆N∆CC"
                     /ApEinfo_revcolor="#ff6600"
                     /ApEinfo_fwdcolor="#ff6600"
                     /note="codon_start: 1 label: MBD3 (fragment) note: pLannotate note: /database=swissprot note: /fragment=True note: /identity=74.0 note: /match_length=75.3 note: /other=CDS transl_table: 1 translation: DCPALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNAVDLSSFDFRTGKMMPSKLQKNKQRLRNDPLNQNKGKPDLNTTLPIRQTASIFKQPVTKFTNHPSNKVKSDPQRMNEQPRQLFWEKRLQGLSASDVTEQIIKTMELPKGLQGVGPGSNDETLLSAVASALHTSSAPITGQVSAAVEKNPAVWLNTSQPLCRAADTEEVDI"
     CDS             2047..2766
                     /label="EGFP"
                     /ApEinfo_revcolor="#993366"
                     /ApEinfo_fwdcolor="#993366"
                     /note="codon_start: 1 label: EGFP note: pLannotate note: /database=snapgene note: /fragment=False note: /identity=100.0 note: /match_length=100.0 note: /other=CDS transl_table: 1 translation: MVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGITLGMDELYK*"
     CDS             2783..2866
                     /label="large T antigen (fragment)"
                     /ApEinfo_revcolor="#993366"
                     /ApEinfo_fwdcolor="#993366"
                     /note="codon_start: 1 label: large T antigen (fragment) note: pLannotate note: /database=snapgene note: /fragment=True note: /identity=100.0 note: /match_length=3.9 note: /other=CDS transl_table: 1 translation: DHNQPYHICRGFTCFKKPPTPPPEPET*"
     polyA_signal    2889..3010
                     /label="SV40 poly(A) signal"
                     /ApEinfo_revcolor="#b4abac"
                     /ApEinfo_fwdcolor="#b4abac"
                     /note="label: SV40 poly(A) signal note: pLannotate note: /database=snapgene note: /fragment=False note: /identity=100.0 note: /match_length=100.0 note: /other=polyA_signal"
     rep_origin      complement(3044..3472)
                     /label="f1 ori"
                     /ApEinfo_revcolor="#ffff00"
                     /ApEinfo_fwdcolor="#ffff00"
                     /note="direction: LEFT label: f1 ori note: pLannotate note: /database=snapgene note: /fragment=False note: /identity=100.0 note: /match_length=100.0 note: /other=rep_origin"
     promoter        3499..3603
                     /label="AmpR promoter"
                     /ApEinfo_revcolor="#b7e6d7"
                     /ApEinfo_fwdcolor="#b7e6d7"
                     /note="label: AmpR promoter note: pLannotate note: /database=snapgene note: /fragment=False note: /identity=100.0 note: /match_length=100.0 note: /other=promoter"
     promoter        3605..3962
                     /label="SV40 promoter"
                     /ApEinfo_revcolor="#b7e6d7"
                     /ApEinfo_fwdcolor="#b7e6d7"
                     /note="label: SV40 promoter note: pLannotate note: /database=snapgene note: /fragment=False note: /identity=100.0 note: /match_length=100.0 note: /other=promoter"
     CDS             3997..4791
                     /label="NeoR/KanR"
                     /ApEinfo_revcolor="#b7e6d7"
                     /ApEinfo_fwdcolor="#b7e6d7"
                     /note="codon_start: 1 label: NeoR/KanR note: pLannotate note: /database=snapgene note: /fragment=False note: /identity=100.0 note: /match_length=100.0 note: /other=CDS transl_table: 1 translation: MIEQDGLHAGSPAAWVERLFGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLSSHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKASMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVADRYQDIALATRDIAEELGGEWADRFLVLYGIAAPDSQRIAFYRLLDEFF*"
     CDS             4812..4964
                     /label="ble (fragment)"
                     /ApEinfo_revcolor="#993366"
                     /ApEinfo_fwdcolor="#993366"
                     /note="codon_start: 1 label: ble (fragment) note: pLannotate note: /database=swissprot note: /fragment=True note: /identity=100.0 note: /match_length=40.5 note: /other=CDS transl_table: 1 translation: MTDQATPNLPSRDFDSTAAFYERLGFGIVFRDAGWMILQRGDLMLEFFAHP"
     polyA_signal    5023..5070
                     /label="HSV TK poly(A) signal"
                     /ApEinfo_revcolor="#b4abac"
                     /ApEinfo_fwdcolor="#b4abac"
                     /note="label: HSV TK poly(A) signal note: pLannotate note: /database=snapgene note: /fragment=False note: /identity=98.0 note: /match_length=100.0 note: /other=polyA_signal"
     polyA_signal    complement(5161..5177)
                     /label="bGH poly(A) signal (fragment)"
                     /ApEinfo_revcolor="#b4abac"
                     /ApEinfo_fwdcolor="#b4abac"
                     /note="label: bGH poly(A) signal (fragment) note: pLannotate note: /database=snapgene note: /fragment=True note: /identity=100.0 note: /match_length=8.2 note: /other=polyA_signal"
ORIGIN
        1 ttgagatcct ttttttctgc gcgtaatctg ctgcttgcaa acaaaaaaac caccgctacc
       61 agcggtggtt tgtttgccgg atcaagagct accaactctt tttccgaagg taactggctt
      121 cagcagagcg cagataccaa atactgttct tctagtgtag ccgtagttag gccaccactt
      181 caagaactct gtagcaccgc ctacatacct cgctctgcta atcctgttac cagtggctgc
      241 tgccagtggc gataagtcgt gtcttaccgg gttggactca agacgatagt taccggataa
      301 ggcgcagcgg tcgggctgaa cggggggttc gtgcacacag cccagcttgg agcgaacgac
      361 ctacaccgaa ctgagatacc tacagcgtga gctatgagaa agcgccacgc ttcccgaagg
      421 gagaaaggcg gacaggtatc cggtaagcgg cagggtcgga acaggagagc gcacgaggga
      481 gcttccaggg ggaaacgcct ggtatcttta tagtcctgtc gggtttcgcc acctctgact
      541 tgagcgtcga tttttgtgat gctcgtcagg ggggcggagc ctatggaaaa acgccagcaa
      601 cgcggccttt ttacggttcc tggccttttg ctggcctttt gctcacatgt tctttcctgc
      661 gttatcccct gattctgtgg ataaccgtat taccgccatg cattagttat taatagtaat
      721 caattacggg gtcattagtt catagcccat atatggagtt ccgcgttaca taacttacgg
      781 taaatggccc gcctggctga ccgcccaacg acccccgccc attgacgtca ataatgacgt
      841 atgttcccat agtaacgcca atagggactt tccattgacg tcaatgggtg gagtatttac
      901 ggtaaactgc ccacttggca gtacatcaag tgtatcatat gccaagtacg ccccctattg
      961 acgtcaatga cggtaaatgg cccgcctggc attatgccca gtacatgacc ttatgggact
     1021 ttcctacttg gcagtacatc tacgtattag tcatcgctat taccatggtg atgcggtttt
     1081 ggcagtacat caatgggcgt ggatagcggt ttgactcacg gggatttcca agtctccacc
     1141 ccattgacgt caatgggagt ttgttttggc accaaaatca acgggacttt ccaaaatgtc
     1201 gtaacaactc cgccccattg acgcaaatgg gcggtaggcg tgtacggtgg gaggtctata
     1261 taagcagagc tggtttagtg aaccgtcaga tccgctagcg ctaccggact cagatctcga
     1321 gctcaagctt cgaattctgc agtcgacgcc atggactgcc cggccctccc ccccggatgg
     1381 aagaaggagg aagtgatccg aaaatcaggg ctcagtgctg gcaagagcga tgtctactac
     1441 ttcagtccaa gtggtaagaa gttcagaagt aaacctcagc tggcaagata cctgggaaat
     1501 gctgttgacc ttagcagttt tgacttcagg accggcaaga tgatgcctag taaattacag
     1561 aagaacaagc agagactccg gaatgacccc ctcaatcaga acaagggtaa accagacctg
     1621 aacacaacat tgccaattag acaaactgca tcaattttca agcaaccagt aaccaaattc
     1681 acgaaccacc cgagcaataa ggtgaagtca gacccccagc ggatgaatga acaaccacgt
     1741 cagcttttct gggagaagag gctacaagga cttagcgcat cagatgtaac agaacaaatt
     1801 ataaaaacca tggagctacc taaaggtctt caaggagtcg gtccaggtag caatgacgag
     1861 acccttctgt ctgctgtggc cagtgcttta cacacaagct ctgcgcccat cacaggacaa
     1921 gtctctgctg ccgtggaaaa gaaccctgct gtttggctta acacatctca acccctctgc
     1981 cgggctgcgg acacggagga agtagacatt gacatggacg atggagatga ggcgtgcggc
     2041 cgcgccatgg tgagcaaggg cgaggagctg ttcaccgggg tggtgcccat cctggtcgag
     2101 ctggacggcg acgtaaacgg ccacaagttc agcgtgtccg gcgagggcga gggcgatgcc
     2161 acctacggca agctgaccct gaagttcatc tgcaccaccg gcaagctgcc cgtgccctgg
     2221 cccaccctcg tgaccaccct gacctacggc gtgcagtgct tcagccgcta ccccgaccac
     2281 atgaagcagc acgacttctt caagtccgcc atgcccgaag gctacgtcca ggagcgcacc
     2341 atcttcttca aggacgacgg caactacaag acccgcgccg aggtgaagtt cgagggcgac
     2401 accctggtga accgcatcga gctgaagggc atcgacttca aggaggacgg caacatcctg
     2461 gggcacaagc tggagtacaa ctacaacagc cacaacgtct atatcatggc cgacaagcag
     2521 aagaacggca tcaaggtgaa cttcaagatc cgccacaaca tcgaggacgg cagcgtgcag
     2581 ctcgccgacc actaccagca gaacaccccc atcggcgacg gccccgtgct gctgcccgac
     2641 aaccactacc tgagcaccca gtccgccctg agcaaagacc ccaacgagaa gcgcgatcac
     2701 atggtcctgc tggagttcgt gaccgccgcc gggatcactc tcggcatgga cgagctgtac
     2761 aagtaaagcg gccgcgactc tagatcataa tcagccatac cacatttgta gaggttttac
     2821 ttgctttaaa aaacctccca cacctccccc tgaacctgaa acataaaatg aatgcaattg
     2881 ttgttgttaa cttgtttatt gcagcttata atggttacaa ataaagcaat agcatcacaa
     2941 atttcacaaa taaagcattt ttttcactgc attctagttg tggtttgtcc aaactcatca
     3001 atgtatctta aggcgtaaat tgtaagcgtt aatattttgt taaaattcgc gttaaatttt
     3061 tgttaaatca gctcattttt taaccaatag gccgaaatcg gcaaaatccc ttataaatca
     3121 aaagaataga ccgagatagg gttgagtgtt gttccagttt ggaacaagag tccactatta
     3181 aagaacgtgg actccaacgt caaagggcga aaaaccgtct atcagggcga tggcccacta
     3241 cgtgaaccat caccctaatc aagttttttg gggtcgaggt gccgtaaagc actaaatcgg
     3301 aaccctaaag ggagcccccg atttagagct tgacggggaa agccggcgaa cgtggcgaga
     3361 aaggaaggga agaaagcgaa aggagcgggc gctagggcgc tggcaagtgt agcggtcacg
     3421 ctgcgcgtaa ccaccacacc cgccgcgctt aatgcgccgc tacagggcgc gtcaggtggc
     3481 acttttcggg gaaatgtgcg cggaacccct atttgtttat ttttctaaat acattcaaat
     3541 atgtatccgc tcatgagaca ataaccctga taaatgcttc aataatattg aaaaaggaag
     3601 agtcctgagg cggaaagaac cagctgtgga atgtgtgtca gttagggtgt ggaaagtccc
     3661 caggctcccc agcaggcaga agtatgcaaa gcatgcatct caattagtca gcaaccaggt
     3721 gtggaaagtc cccaggctcc ccagcaggca gaagtatgca aagcatgcat ctcaattagt
     3781 cagcaaccat agtcccgccc ctaactccgc ccatcccgcc cctaactccg cccagttccg
     3841 cccattctcc gccccatggc tgactaattt tttttattta tgcagaggcc gaggccgcct
     3901 cggcctctga gctattccag aagtagtgag gaggcttttt tggaggccta ggcttttgca
     3961 aagatcgatc aagagacagg atgaggatcg tttcgcatga ttgaacaaga tggattgcac
     4021 gcaggttctc cggccgcttg ggtggagagg ctattcggct atgactgggc acaacagaca
     4081 atcggctgct ctgatgccgc cgtgttccgg ctgtcagcgc aggggcgccc ggttcttttt
     4141 gtcaagaccg acctgtccgg tgccctgaat gaactgcaag acgaggcagc gcggctatcg
     4201 tggctggcca cgacgggcgt tccttgcgca gctgtgctcg acgttgtcac tgaagcggga
     4261 agggactggc tgctattggg cgaagtgccg gggcaggatc tcctgtcatc tcaccttgct
     4321 cctgccgaga aagtatccat catggctgat gcaatgcggc ggctgcatac gcttgatccg
     4381 gctacctgcc cattcgacca ccaagcgaaa catcgcatcg agcgagcacg tactcggatg
     4441 gaagccggtc ttgtcgatca ggatgatctg gacgaagagc atcaggggct cgcgccagcc
     4501 gaactgttcg ccaggctcaa ggcgagcatg cccgacggcg aggatctcgt cgtgacccat
     4561 ggcgatgcct gcttgccgaa tatcatggtg gaaaatggcc gcttttctgg attcatcgac
     4621 tgtggccggc tgggtgtggc ggaccgctat caggacatag cgttggctac ccgtgatatt
     4681 gctgaagagc ttggcggcga atgggctgac cgcttcctcg tgctttacgg tatcgccgct
     4741 cccgattcgc agcgcatcgc cttctatcgc cttcttgacg agttcttctg agcgggactc
     4801 tggggttcga aatgaccgac caagcgacgc ccaacctgcc atcacgagat ttcgattcca
     4861 ccgccgcctt ctatgaaagg ttgggcttcg gaatcgtttt ccgggacgcc ggctggatga
     4921 tcctccagcg cggggatctc atgctggagt tcttcgccca ccctaggggg aggctaactg
     4981 aaacacggaa ggagacaata ccggaaggaa cccgcgctat gacggcaata aaaagacaga
     5041 ataaaacgca cggtgttggg tcgtttgttc ataaacgcgg ggttcggtcc cagggctggc
     5101 actctgtcga taccccaccg agaccccatt ggggccaata cgcccgcgtt tcttcctttt
     5161 ccccacccca ccccccaagt tcgggtgaag gcccagggct cgcagccaac gtcggggcgg
     5221 caggccctgc catagcctca ggttactcat atatacttta gattgattta aaacttcatt
     5281 tttaatttaa aaggatctag gtgaagatcc tttttgataa tctcatgacc aaaatccctt
     5341 aacgtgagtt ttcgttccac tgagcgtcag accccgtaga aaagatcaaa ggatcttc
//