LOCUS       pAAV-puro_TRE3VG        6653 bp    DNA     circular SYN 28-AUG-2024
DEFINITION  .
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 6653)
  AUTHORS   Matthias
  TITLE     Direct Submission
  JOURNAL   Exported Nov 14, 2024 from SnapGene 8.0.0
            https://www.snapgene.com
FEATURES             Location/Qualifiers
     source          1..6653
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     primer_bind     63..82
                     /label=AAV-NEO_5BB_FW
                     /note="color: black; sequence: GCTTGTCTGTAAGCGGATGC; added:
                     2023-10-26"
     primer_bind     379..395
                     /label=M13 fwd
                     /note="common sequencing primer, one of multiple similar 
                     variants"
                     /note="color: #a020f0; direction: RIGHT"
     misc_feature    402..1202
                     /label=5-HAR_AAVS1
                     /note="color: #ff00ff"
     misc_feature    416
                     /label=mutation
                     /note="T->A compared to the Ensemble-Ref-genome. However, 
                     mutation is already present in the addgene-sequence.Located
                     within intron_1 of the PPP1R12C-gene
                     "
                     /note="color: #a6acb3"
     misc_feature    454
                     /label=mutation
                     /note="C->T (compared to the addgene-sequence)Nucleotide in
                     any case part of intron_1 of the PPP1R12C-gene
                     "
                     /note="color: #a6acb3"
     misc_feature    1210..1236
                     /label=SA
                     /note="color: #ffcc00"
     CDS             join(1237..1251,1252..1260)
                     /codon_start=1
                     /label=linker
                     /note="This feature has 2 segments:
                        1: 1237 .. 1251 / #c0c0c0
                        2: 1252 .. 1260 / #c0c0c0 / GSG"
                     /translation="GLERSGSG"
     CDS             1261..1314
                     /codon_start=1
                     /product="2A peptide from Thosea asigna virus capsid 
                     protein"
                     /label=T2A
                     /note="Eukaryotic ribosomes fail to insert a peptide bond 
                     between the Gly and Pro residues, yielding separate 
                     polypeptides."
                     /note="color: #cc99b2
                     Cleavage site after base 1311"
                     /translation="EGRGSLLTCGDVEENPGP"
     CDS             1324..1923
                     /codon_start=1
                     /gene="pac from Streptomyces alboniger"
                     /product="puromycin N-acetyltransferase"
                     /label=PuroR
                     /note="confers resistance to puromycin"
                     /note="color: #ccffcc"
                     /translation="MTEYKPTVRLATRDDVPRAVRTLAAAFADYPATRHTVDPDRHIER
                     VTELQELFLTRVGLDIGKVWVADDGAAVAVWTTPESVEAGAVFAEIGPRMAELSGSRLA
                     AQQQMEGLLAPHRPKEPAWFLATVGVSPDHQGKGLGSAVVLPGVEAAERAGVPAFLETS
                     APRNLPFYERLGFTVTADVEVPEGPRTWCMTRKPGA"
     primer_bind     complement(1465..1486)
                     /label=AAV_PURO_R2
                     /note="color: black; sequence: TGAGGAAGAGTTCTTGCAGCTC; 
                     added: 2023-10-26"
     polyA_signal    1961..2185
                     /label=bGH poly(A) signal
                     /note="bovine growth hormone polyadenylation signal"
                     /note="color: #a6acb3"
     primer_bind     2172..2189
                     /label=oMG012
                     /note="color: black; sequence: 
                     GGTGGGCTCTATGGTCACgggaggtggtccctgcag; added: 2023-11-16"
     primer_bind     complement(2188..2207)
                     /label=oMG013
                     /note="color: black; sequence: 
                     GATAGGGAGTAAACTCGAGTctccgcgcctacagctcaagccac; added: 
                     2023-11-16"
     promoter        2192..2541
                     /label=TRE3GV promoter
                     /note="3rd-generation Tet-responsive promoter that can be 
                     activated by binding of Tet-On(R) 3G, optimized for 
                     retroviral and lentiviral vectors"
                     /note="color: #ffffff; direction: RIGHT"
     protein_bind    2200..2218
                     /gene="tetO"
                     /label=tet operator
                     /bound_moiety="tetracycline repressor TetR"
                     /note="bacterial operator O2 for the tetR and tetA genes"
                     /note="color: #31849b"
     primer_bind     complement(2228..2243)
                     /label=oMG013
                     /note="color: black; sequence: 
                     GATAGGGAGTAAACTCGAGTctccgcgcctacagctcaagccac; added: 
                     2023-11-16"
     protein_bind    2236..2254
                     /gene="tetO"
                     /label=tet operator
                     /bound_moiety="tetracycline repressor TetR"
                     /note="bacterial operator O2 for the tetR and tetA genes"
                     /note="color: #31849b"
     protein_bind    2272..2290
                     /gene="tetO"
                     /label=tet operator
                     /bound_moiety="tetracycline repressor TetR"
                     /note="bacterial operator O2 for the tetR and tetA genes"
                     /note="color: #31849b"
     primer_bind     complement(2300..2315)
                     /label=oMG013
                     /note="color: black; sequence: 
                     GATAGGGAGTAAACTCGAGTctccgcgcctacagctcaagccac; added: 
                     2023-11-16"
     protein_bind    2308..2326
                     /gene="tetO"
                     /label=tet operator
                     /bound_moiety="tetracycline repressor TetR"
                     /note="bacterial operator O2 for the tetR and tetA genes"
                     /note="color: #31849b"
     primer_bind     complement(2337..2351)
                     /label=oMG013
                     /note="color: black; sequence: 
                     GATAGGGAGTAAACTCGAGTctccgcgcctacagctcaagccac; added: 
                     2023-11-16"
     protein_bind    2344..2362
                     /gene="tetO"
                     /label=tet operator
                     /bound_moiety="tetracycline repressor TetR"
                     /note="bacterial operator O2 for the tetR and tetA genes"
                     /note="color: #31849b"
     primer_bind     complement(2373..2387)
                     /label=oMG013
                     /note="color: black; sequence: 
                     GATAGGGAGTAAACTCGAGTctccgcgcctacagctcaagccac; added: 
                     2023-11-16"
     protein_bind    2380..2398
                     /gene="tetO"
                     /label=tet operator
                     /bound_moiety="tetracycline repressor TetR"
                     /note="bacterial operator O2 for the tetR and tetA genes"
                     /note="color: #31849b"
     primer_bind     complement(2409..2423)
                     /label=oMG013
                     /note="color: black; sequence: 
                     GATAGGGAGTAAACTCGAGTctccgcgcctacagctcaagccac; added: 
                     2023-11-16"
     protein_bind    2416..2434
                     /gene="tetO"
                     /label=tet operator
                     /bound_moiety="tetracycline repressor TetR"
                     /note="bacterial operator O2 for the tetR and tetA genes"
                     /note="color: #31849b"
     primer_bind     complement(2542..2574)
                     /label=Primer 1
                     /note="color: black; sequence: 
                     ctcctcgcccttgctcaccatGGTGGCACTAGT; added: 2023-07-27"
     misc_feature    2548..2557
                     /label=Kozak sequence
                     /note="color: #a6acb3"
     CDS             join(2554..2556,2557..2559,2560..3273)
                     /codon_start=1
                     /product="enhanced GFP"
                     /label=EGFP
                     /note="mammalian codon-optimized"
                     /note="This feature has 3 segments:
                        1: 2554 .. 2556 / #05fd14
                        2: 2557 .. 2559 / #05fd14 / 1a
                        3: 2560 .. 3273 / #05fd14"
                     /translation="MVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTL
                     KFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDD
                     GNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIK
                     VNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLL
                     EFVTAAGITLGMDELYK"
     primer_bind     3274..3291
                     /label=OSB023
                     /note="color: black; sequence: GAATTCGAGCTCGGTACC; added: 
                     2023-10-26"
     polyA_signal    3470..3551
                     /label=SV40 poly(A) signal
                     /note="SV40 polyadenylation signal"
                     /note="color: #a6acb3"
     misc_feature    3579..4413
                     /label=3-HAR_AAVS1
                     /note="color: #ff00ff"
     primer_bind     complement(4432..4448)
                     /label=M13 rev
                     /note="common sequencing primer, one of multiple similar 
                     variants"
                     /note="color: #a020f0; direction: LEFT"
     protein_bind    4456..4472
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
                     /note="color: #31849b"
     promoter        complement(join(4480..4486,4487..4504,4505..4510))
                     /label=lac promoter
                     /note="promoter for the E. coli lac operon"
                     /note="This reverse directional feature has 3 segments:
                        1: 4480 .. 4486 / #ffffff / -10
                        2: 4487 .. 4504 / #ffffff
                        3: 4505 .. 4510 / #ffffff / -35"
     primer_bind     complement(4481..4500)
                     /label=AAV_BACKBONE_F2
                     /note="color: black; sequence: ATGCTTCCGGCTCGTATGTT"
     protein_bind    4525..4546
                     /label=CAP binding site
                     /bound_moiety="E. coli catabolite activator protein"
                     /note="CAP binding activates transcription in the presence 
                     of cAMP."
                     /note="color: #31849b"
     rep_origin      complement(4834..5422)
                     /direction=LEFT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
                     /note="color: #ffff00"
     CDS             complement(join(5593..6384,6385..6453))
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /note="This feature has 2 segments:
                        1: 5593 .. 6384 / #ccffcc
                        2: 6385 .. 6453 / #ccffcc / signal sequence
                     Cleavage site after base 6384"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     promoter        complement(6454..6558)
                     /gene="bla"
                     /label=AmpR promoter
                     /note="color: #ffffff; direction: LEFT"
ORIGIN
        1 tcgcgcgttt cggtgatgac ggtgaaaacc tctgacacat gcagctcccg gagacggtca
       61 cagcttgtct gtaagcggat gccgggagca gacaagcccg tcagggcgcg tcagcgggtg
      121 ttggcgggtg tcggggctgg cttaactatg cggcatcaga gcagattgta ctgagagtgc
      181 accatatgcg gtgtgaaata ccgcacagat gcgtaaggag aaaataccgc atcaggcgcc
      241 attcgccatt caggctgcgc aactgttggg aagggcgatc ggtgcgggcc tcttcgctat
      301 tacgccagct ggcgaaaggg ggatgtgctg caaggcgatt aagttgggta acgccagggt
      361 tttcccagtc acgacgttgt aaaacgacgg ccagtgaatt gtgctttctc tgaccagcat
      421 tctctcccct gggcctgtgc cgctttctgt ctgtagcttg tggcctgggt cacctctacg
      481 gctggcccag atccttccct gccgcctcct tcaggttccg tcttcctcca ctccctcttc
      541 cccttgctct ctgctgtgtt gctgcccaag gatgctcttt ccggagcact tccttctcgg
      601 cgctgcacca cgtgatgtcc tctgagcgga tcctccccgt gtctgggtcc tctccgggca
      661 tctctcctcc ctcacccaac cccatgccgt cttcactcgc tgggttccct tttccttctc
      721 cttctggggc ctgtgccatc tctcgtttct taggatggcc ttctccgacg gatgtctccc
      781 ttgcgtcccg cctccccttc ttgtaggcct gcatcatcac cgtttttctg gacaacccca
      841 aagtaccccg tctccctggc tttagccacc tctccatcct cttgctttct ttgcctggac
      901 accccgttct cctgtggatt cgggtcacct ctcactcctt tcatttgggc agctccccta
      961 ccccccttac ctctctagtc tgtgctagct cttccagccc cctgtcatgg catcttccag
     1021 gggtccgaga gctcagctag tcttcttcct ccaacccggg cccctatgtc cacttcagga
     1081 cagcatgttt gctgcctcca gggatcctgt gtccccgagc tgggaccacc ttatattccc
     1141 agggccggtt aatgtggctc tggttctggg tacttttatc tgtcccctcc accccacagt
     1201 ggggcaagct tctgacctct tctcttcctc ccacagggcc tcgagagatc tggcagcgga
     1261 gagggcagag gaagtcttct aacatgcggt gacgtggagg agaatcccgg ccctaggctc
     1321 gagatgaccg agtacaagcc cacggtgcgc ctcgccaccc gcgacgacgt ccccagggcc
     1381 gtacgcaccc tcgccgccgc gttcgccgac taccccgcca cgcgccacac cgtcgatccg
     1441 gaccgccaca tcgagcgggt caccgagctg caagaactct tcctcacgcg cgtcgggctc
     1501 gacatcggca aggtgtgggt cgcggacgac ggcgccgcgg tggcggtctg gaccacgccg
     1561 gagagcgtcg aagcgggggc ggtgttcgcc gagatcggcc cgcgcatggc cgagttgagc
     1621 ggttcccggc tggccgcgca gcaacagatg gaaggcctcc tggcgccgca ccggcccaag
     1681 gagcccgcgt ggttcctggc caccgtcggc gtctcgcccg accaccaggg caagggtctg
     1741 ggcagcgccg tcgtgctccc cggagtggag gcggccgagc gcgccggggt gcccgccttc
     1801 ctggagacct ccgcgccccg caacctcccc ttctacgagc ggctcggctt caccgtcacc
     1861 gccgacgtcg aggtgcccga aggaccgcgc acctggtgca tgacccgcaa gcccggtgcc
     1921 tgatctagag ggcccgttta aacccgctga tcagcctcga ctgtgccttc tagttgccag
     1981 ccatctgttg tttgcccctc ccccgtgcct tccttgaccc tggaaggtgc cactcccact
     2041 gtcctttcct aataaaatga ggaaattgca tcgcattgtc tgagtaggtg tcattctatt
     2101 ctggggggtg gggtggggca ggacagcaag ggggaggatt gggaagacaa tagcaggcat
     2161 gctggggatg cggtgggctc tatggtcact cgagtttact ccctatcagt gatagagaac
     2221 gtatgaagag tttactccct atcagtgata gagaacgtat gcagacttta ctccctatca
     2281 gtgatagaga acgtataagg agtttactcc ctatcagtga tagagaacgt atgaccagtt
     2341 tactccctat cagtgataga gaacgtatct acagtttact ccctatcagt gatagagaac
     2401 gtatatccag tttactccct atcagtgata gagaacgtat gtcgaggtag gcgtgtacgg
     2461 tgggcgccta taaaagcaga gctcgtttag tgaaccgtca gatcgcctgg agcaattcca
     2521 caacactttt gtcttatact tactagtgcc accatggtga gcaagggcga ggagctgttc
     2581 accggggtgg tgcccatcct ggtcgagctg gacggcgacg taaacggcca caagttcagc
     2641 gtgtccggcg agggcgaggg cgatgccacc tacggcaagc tgaccctgaa gttcatctgc
     2701 accaccggca agctgcccgt gccctggccc accctcgtga ccaccctgac ctacggcgtg
     2761 cagtgcttca gccgctaccc cgaccacatg aagcagcacg acttcttcaa gtccgccatg
     2821 cccgaaggct acgtccagga gcgcaccatc ttcttcaagg acgacggcaa ctacaagacc
     2881 cgcgccgagg tgaagttcga gggcgacacc ctggtgaacc gcatcgagct gaagggcatc
     2941 gacttcaagg aggacggcaa catcctgggg cacaagctgg agtacaacta caacagccac
     3001 aacgtctata tcatggccga caagcagaag aacggcatca aggtgaactt caagatccgc
     3061 cacaacatcg aggacggcag cgtgcagctc gccgaccact accagcagaa cacccccatc
     3121 ggcgacggcc ccgtgctgct gcccgacaac cactacctga gcacccagtc cgccctgagc
     3181 aaagacccca acgagaagcg cgatcacatg gtcctgctgg agttcgtgac cgccgccggg
     3241 atcactctcg gcatggacga gctgtacaag taagaattcg agctcggtac ccggggatcc
     3301 tctagtcagc tgacgcgtgc tagcgcggcc gcatcgataa gcttgtcgac gatatctcta
     3361 gaggatcata atcagccata ccacatttgt agaggtttta cttgctttaa aaaacctccc
     3421 acacctcccc ctgaacctga aacataaaat gaatgcaatt gttgttgtta acttgtttat
     3481 tgcagcttat aatggttaca aataaagcaa tagcatcaca aatttcacaa ataaagcatt
     3541 tttttcactg ccttgacagt actcttaagt cgacttacta gggacaggat tggtgacaga
     3601 aaagccccat ccttaggcct cctccttcct agtctcctga tattgggtct aacccccacc
     3661 tcctgttagg cagattcctt atctggtgac acacccccat ttcctggagc catctctctc
     3721 cttgccagaa cctctaaggt ttgcttacga tggagccaga gaggatcctg ggagggagag
     3781 cttggcaggg ggtgggaggg aaggggggga tgcgtgacct gcccggttct cagtggccac
     3841 cctgcgctac cctctcccag aacctgagct gctctgacgc ggctgtctgg tgcgtttcac
     3901 tgatcctggt gctgcagctt ccttacactt cccaagagga gaagcagttt ggaaaaacaa
     3961 aatcagaata agttggtcct gagttctaac tttggctctt cacctttcta gtccccaatt
     4021 tatattgttc ctccgtgcgt cagttttacc tgtgagataa ggccagtagc cagccccgtc
     4081 ctggcagggc tgtggtgagg aggggggtgt ccgtgtggaa aactcccttt gtgagaatgg
     4141 tgcgtcctag gtgttcacca ggtcgtggcc gcctctactc cctttctctt tctccatcct
     4201 tctttcctta aagagtcccc agtgctatct gggacatatt cctccgccca gagcagggtc
     4261 ccgcttccct aaggccctgc tctgggcttc tgggtttgag tccttggcaa gcccaggaga
     4321 ggcgctcagg cttccctgtc ccccttcctc gtccaccatc tcatgcccct ggctctcctg
     4381 ccccttccct acaggggttc ctggctctgc tctaagcttg gcgtaatcat ggtcatagct
     4441 gtttcctgtg tgaaattgtt atccgctcac aattccacac aacatacgag ccggaagcat
     4501 aaagtgtaaa gcctggggtg cctaatgagt gagctaactc acattaattg cgttgcgctc
     4561 actgcccgct ttccagtcgg gaaacctgtc gtgccagctg cattaatgaa tcggccaacg
     4621 cgcggggaga ggcggtttgc gtattgggcg ctcttccgct tcctcgctca ctgactcgct
     4681 gcgctcggtc gttcggctgc ggcgagcggt atcagctcac tcaaaggcgg taatacggtt
     4741 atccacagaa tcaggggata acgcaggaaa gaacatgtga gcaaaaggcc agcaaaaggc
     4801 caggaaccgt aaaaaggccg cgttgctggc gtttttccat aggctccgcc cccctgacga
     4861 gcatcacaaa aatcgacgct caagtcagag gtggcgaaac ccgacaggac tataaagata
     4921 ccaggcgttt ccccctggaa gctccctcgt gcgctctcct gttccgaccc tgccgcttac
     4981 cggatacctg tccgcctttc tcccttcggg aagcgtggcg ctttctcata gctcacgctg
     5041 taggtatctc agttcggtgt aggtcgttcg ctccaagctg ggctgtgtgc acgaaccccc
     5101 cgttcagccc gaccgctgcg ccttatccgg taactatcgt cttgagtcca acccggtaag
     5161 acacgactta tcgccactgg cagcagccac tggtaacagg attagcagag cgaggtatgt
     5221 aggcggtgct acagagttct tgaagtggtg gcctaactac ggctacacta gaagaacagt
     5281 atttggtatc tgcgctctgc tgaagccagt taccttcgga aaaagagttg gtagctcttg
     5341 atccggcaaa caaaccaccg ctggtagcgg tggttttttt gtttgcaagc agcagattac
     5401 gcgcagaaaa aaaggatctc aagaagatcc tttgatcttt tctacggggt ctgacgctca
     5461 gtggaacgaa aactcacgtt aagggatttt ggtcatgaga ttatcaaaaa ggatcttcac
     5521 ctagatcctt ttaaattaaa aatgaagttt taaatcaatc taaagtatat atgagtaaac
     5581 ttggtctgac agttaccaat gcttaatcag tgaggcacct atctcagcga tctgtctatt
     5641 tcgttcatcc atagttgcct gactccccgt cgtgtagata actacgatac gggagggctt
     5701 accatctggc cccagtgctg caatgatacc gcgagaccca cgctcaccgg ctccagattt
     5761 atcagcaata aaccagccag ccggaagggc cgagcgcaga agtggtcctg caactttatc
     5821 cgcctccatc cagtctatta attgttgccg ggaagctaga gtaagtagtt cgccagttaa
     5881 tagtttgcgc aacgttgttg ccattgctac aggcatcgtg gtgtcacgct cgtcgtttgg
     5941 tatggcttca ttcagctccg gttcccaacg atcaaggcga gttacatgat cccccatgtt
     6001 gtgcaaaaaa gcggttagct ccttcggtcc tccgatcgtt gtcagaagta agttggccgc
     6061 agtgttatca ctcatggtta tggcagcact gcataattct cttactgtca tgccatccgt
     6121 aagatgcttt tctgtgactg gtgagtactc aaccaagtca ttctgagaat agtgtatgcg
     6181 gcgaccgagt tgctcttgcc cggcgtcaat acgggataat accgcgccac atagcagaac
     6241 tttaaaagtg ctcatcattg gaaaacgttc ttcggggcga aaactctcaa ggatcttacc
     6301 gctgttgaga tccagttcga tgtaacccac tcgtgcaccc aactgatctt cagcatcttt
     6361 tactttcacc agcgtttctg ggtgagcaaa aacaggaagg caaaatgccg caaaaaaggg
     6421 aataagggcg acacggaaat gttgaatact catactcttc ctttttcaat attattgaag
     6481 catttatcag ggttattgtc tcatgagcgg atacatattt gaatgtattt agaaaaataa
     6541 acaaataggg gttccgcgca catttccccg aaaagtgcca cctgacgtct aagaaaccat
     6601 tattatcatg acattaacct ataaaaatag gcgtatcacg aggccctttc gtc
//
