LOCUS       pAAV-Ple155-EGFP        5943 bp    DNA     circular SYN 06-NOV-2023
DEFINITION  .
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 5943)
  AUTHORS   Gerard Coughlin
  TITLE     Direct Submission
  JOURNAL   Exported Nov 26, 2024 from SnapGene 8.0.0
            https://www.snapgene.com
FEATURES             Location/Qualifiers
     source          1..5943
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     primer_bind     complement(5..27)
                     /label=pGEX 3'
                     /note="pGEX vectors, reverse primer"
                     /note="color: black; sequence: CCGGGAGCTGCATGTGTCAGAGG"
     primer_bind     127..146
                     /label=pRS-marker
                     /note="pRS vectors, use to sequence yeast selectable 
                     marker"
                     /note="color: black; sequence: CGGCATCAGAGCAGATTGTA"
     rep_origin      complement(163..618)
                     /direction=LEFT
                     /label=f1 ori
                     /note="f1 bacteriophage origin of replication; arrow 
                     indicates direction of (+) strand synthesis"
                     /note="color: #ffff00"
     primer_bind     complement(300..321)
                     /label=F1ori-F
                     /note="F1 origin, forward primer"
                     /note="color: black; sequence: GTGGACTCTTGTTCCAAACTGG"
     primer_bind     512..531
                     /label=F1ori-R
                     /note="F1 origin, reverse primer"
                     /note="color: black; sequence: AGGGAAGAAAGCGAAAGGAG"
     repeat_region   693..833
                     /label=AAV2 ITR
                     /note="inverted terminal repeat of adeno-associated virus 
                     serotype 2"
                     /note="color: #ffe4c4"
     repeat_region   704..833
                     /label=AAV2 ITR
                     /note="color: #ffcc99"
     primer_bind     803..825
                     /label=ITR_f
                     /note="color: black; sequence: ggagtggccaactccatcactag; 
                     added: 2020-07-10"
     primer_bind     811..839
                     /label=ITR_W3SL_gib_r
                     /note="color: black; sequence: 
                     caactccatcactaggggttcctgcggcccaaggtaccttgtttaaaaaacctcccaca
                     tctccccc; added: 2020-11-06"
     misc_feature    848..2499
                     /label=Ple155
                     /note="color: #00ffff"
     intron          2534..2666
                     /label=chimeric intron
                     /note="chimera between introns from human beta-globin and 
                     immunoglobulin heavy chain genes"
                     /note="color: #------"
     regulatory      2673..2682
                     /label=Kozak sequence
                     /note="vertebrate consensus sequence for strong initiation 
                     of translation (Kozak, 1987)"
                     /note="color: #a6acb3"
                     /regulatory_class="other"
     CDS             join(2685..2687,2688..3398)
                     /codon_start=1
                     /product="enhanced GFP"
                     /label=EGFP
                     /note="mammalian codon-optimized"
                     /note="This feature has 2 segments:
                        1: 2685 .. 2687 / #05fd14 / 1a
                        2: 2688 .. 3398 / #05fd14"
                     /translation="VSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLK
                     FICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDDG
                     NYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKV
                     NFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLE
                     FVTAAGITLGMDELYK"
     primer_bind     complement(2727..2748)
                     /label=EGFP-N
                     /note="EGFP, reverse primer"
                     /note="color: black; sequence: CGTCGCCGTCCAGCTCGACCAG"
     primer_bind     complement(2988..3007)
                     /label=EXFP-R
                     /note="For distinguishing EGFP variants, reverse primer"
                     /note="color: black; sequence: GTCTTGTAGTTGCCGTCGTC"
     primer_bind     3335..3356
                     /label=EGFP-C
                     /note="EGFP, forward primer"
                     /note="color: black; sequence: CATGGTCCTGCTGGAGTTCGTG"
     primer_bind     3373..3445
                     /label=EGFP_W3SL_gib_f
                     /note="color: black; sequence: 
                     ctctcggcatggacgagctgtacaagtaggaattcataatcaacctctggattacaaaa
                     tttgtgaaagattg; added: 2020-11-06"
     misc_feature    3408..3834
                     /label=W3SL
                     /note="color: #cc99ff"
     primer_bind     3448..3472
                     /label=W3SL_titer_f
                     /note="color: black; sequence: TGGTATTCTTAACTATGTTGCTCCT; 
                     added: 2021-03-17"
     primer_bind     complement(3516..3536)
                     /label=W3SL_titer_r
                     /note="color: black; sequence: AAGCCATACGGGAAGCAATAG; 
                     added: 2021-03-17"
     primer_bind     complement(3809..3920)
                     /label=ITR_W3SL_gib_r
                     /note="color: black; sequence: 
                     caactccatcactaggggttcctgcggcccaaggtaccttgtttaaaaaacctcccaca
                     tctccccc; added: 2020-11-06"
     misc_feature    3839..3882
                     /label=BbsI_GGA_site
                     /note="color: #666699"
     repeat_region   3898..4038
                     /label=AAV2 ITR
                     /note="inverted terminal repeat of adeno-associated virus 
                     serotype 2"
                     /note="color: #ffe4c4"
     repeat_region   3898..4027
                     /label=AAV2 ITR
                     /note="color: #ffcc99"
     primer_bind     complement(3906..3928)
                     /label=ITR_f
                     /note="color: black; sequence: ggagtggccaactccatcactag; 
                     added: 2020-07-10"
     rep_origin      complement(4100..4688)
                     /direction=LEFT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
                     /note="color: #ffff00"
     primer_bind     complement(4180..4199)
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
                     /note="color: black; sequence: GGGAAACGCCTGGTATCTTT"
     CDS             complement(join(4859..5650,5651..5719))
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /note="This feature has 2 segments:
                        1: 4859 .. 5650 / #ccffcc
                        2: 5651 .. 5719 / #ccffcc / signal sequence
                     Cleavage site after base 5650"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     primer_bind     5482..5501
                     /label=Amp-R
                     /note="Ampicillin resistance gene, reverse primer"
                     /note="color: black; sequence: ATAATACCGCGCCACATAGC"
     promoter        complement(5720..5824)
                     /gene="bla"
                     /label=AmpR promoter
                     /note="color: #ffffff; direction: LEFT"
     primer_bind     5892..5910
                     /label=pBRforEco
                     /note="pBR322 vectors, upsteam of EcoRI site, forward 
                     primer"
                     /note="color: black; sequence: AATAGGCGTATCACGAGGC"
ORIGIN
        1 aaaacctctg acacatgcag ctcccggaga cggtcacagc ttgtctgtaa gcggatgccg
       61 ggagcagaca agcccgtcag ggcgcgtcag cgggtgttgg cgggtgtcgg ggctggctta
      121 actatgcggc atcagagcag attgtactga gagtgcacca taaaattgta aacgttaata
      181 ttttgttaaa attcgcgtta aatttttgtt aaatcagctc attttttaac caatagaccg
      241 aaatcggcaa aatcccttat aaatcaaaag aatagcccga gatagagttg agtgttgttc
      301 cagtttggaa caagagtcca ctattaaaga acgtggactc caacgtcaaa gggcgaaaaa
      361 ccgtctatca gggcgatggc ccactacgtg aaccatcacc caaatcaagt tttttggggt
      421 cgaggtgccg taaagcacta aatcggaacc ctaaagggag cccccgattt agagcttgac
      481 ggggaaagcc ggcgaacgtg gcgagaaagg aagggaagaa agcgaaagga gcgggcgcta
      541 aggcgctggc aagtgtagcg gtcacgctgc gcgtaaccac cacacccgcc gcgcttaatg
      601 cgccgctaca gggcgcgtac tatggttgct ttgacgtatg cggtgtgaaa taccgcacag
      661 atgcgtaagg agaaaatacc gcatcaggcg cccctgcagg cagctgcgcg ctcgctcgct
      721 cactgaggcc gcccgggcaa agcccgggcg tcgggcgacc tttggtcgcc cggcctcagt
      781 gagcgagcga gcgcgcagag agggagtggc caactccatc actaggggtt cctgcggccg
      841 cctcgagtca gcagattgaa gaagccctcc tggtctgggg agcccgcctg gggacagact
      901 cgctcagtct ggttggccct tcagcttggg ggcccctccc caaacttcct agccagcttg
      961 ctcacaccct gaccccgggg cctgccgtcc ccacttcctc agctctcacc atggtccccg
     1021 ccgatcctct ctgcagagct gttctgaatg agacatgagt ctccttccca atcccggccc
     1081 ccgccccagg ggccctggcc agcagtgcca cttcacgtgg taccgcttca agggacaggc
     1141 tccgatgcgt gtcccgccgt cctagattgg ggcctgatga gtgtggcctg ggagctggga
     1201 cacgaatcag ggaaacatgg cccaggagct acccccaggt cccagcatct cccatcaata
     1261 ggggtccaca cggagagccc tgccctctgc cctggggcct ggcactcaga cccccaagcc
     1321 caccagcccc tttctacagc cacaactggg tcagggggtc ctaggagact cactcgttaa
     1381 ttaggtgccc tacaaactaa ttagtcttgt caatcatggg ctctgagacc ttgagctggg
     1441 ggtggggtgg gggcagggcc ctctcacctc ggcacagggg cctgagcctt cctccgtctt
     1501 ctcctcctga tccggacact tcattggcat agagggagag agtgtgaact tggccctttg
     1561 tggaacagag gaggctcggg cagaggtggt gatagtgcag cccattcatt ctgagatgaa
     1621 acttccactg gtttccgtaa agacgtcttg gggagggaag ggaaggggat ggggacctcc
     1681 cagtggtatc ccctgcttgg gcactgaggg aaagccacag tggctcgggg taaaaggcag
     1741 ggacatcctc tccccgcctg cctctgtccc cagggagtct cgcctcctgt tcccacctgg
     1801 ggctagggtg atagaggaga ggagatagct caacctggca tttaggtggt gtgggaacag
     1861 gagaccccag actttcttgt tttggggtct ggggcaggca accaggctcc agggacagtg
     1921 agttgaagga agggtggctg ggagacccct tgacttgctg ccaaggagac agagctggag
     1981 ctagggtggc gggtggtgtc tgaggcaggt gcagagaggg agggagggaa ggggcctttg
     2041 actccaacct cctttttctt taccgactgc aggtggcagc tgcccttcca ggagccagtg
     2101 ggggaacctg ggtggctggg tggggacacc tgcaagtcct ccctaagcca gctaccaccc
     2161 tacactgttg gcctcccttc tccaactgtg gggacgctgc tcaggccttt tgtgacatca
     2221 cacctgagag tccctggggt ccagtcattg ctgctgggca cagcgaggtc caagctcagg
     2281 tcgccctgcc ccctacccac catgccagat ccagcatcgt tgtgggcaaa caattatctg
     2341 gatgatcttt atggggctta agcttgggtg ggagcagatg gggcatgagc tggggatttg
     2401 gggatggggg gaatccacac ccccacgtcc tggacgttta aaaggccctc tctggcactg
     2461 ggccggggca gaggccagca gaaaagtgac tggagtccag gcgcgccgaa gttggtcgtg
     2521 aggcactggg caggtaagta tcaaggttac aagacaggtt taaggagacc aatagaaact
     2581 gggcttgtcg agacagagaa gactcttgcg tttctgatag gcacctattg gtcttactga
     2641 catccacttt gcctttctct ccacagaccg gtgccaccat ggccgtgagc aagggcgagg
     2701 agctgttcac cggggtggtg cccatcctgg tcgagctgga cggcgacgta aacggccaca
     2761 agttcagcgt gtccggcgag ggcgagggcg atgccaccta cggcaagctg accctgaagt
     2821 tcatctgcac caccggcaag ctgcccgtgc cctggcccac cctcgtgacc accctgacct
     2881 acggcgtgca gtgcttcagc cgctaccccg accacatgaa gcagcacgac ttcttcaagt
     2941 ccgccatgcc cgaaggctac gtccaggagc gcaccatctt cttcaaggac gacggcaact
     3001 acaagacccg cgccgaggtg aagttcgagg gcgacaccct ggtgaaccgc atcgagctga
     3061 agggcatcga cttcaaggag gacggcaaca tcctggggca caagctggag tacaactaca
     3121 acagccacaa cgtctatatc atggccgaca agcagaagaa cggcatcaag gtgaacttca
     3181 agatccgcca caacatcgag gacggcagcg tgcagctcgc cgaccactac cagcagaaca
     3241 cccccatcgg cgacggcccc gtgctgctgc ccgacaacca ctacctgagc acccagtccg
     3301 ccctgagcaa agaccccaac gagaagcgcg atcacatggt cctgctggag ttcgtgaccg
     3361 ccgccgggat cactctcggc atggacgagc tgtacaagta ggaattcata atcaacctct
     3421 ggattacaaa atttgtgaaa gattgactgg tattcttaac tatgttgctc cttttacgct
     3481 atgtggatac gctgctttaa tgcctttgta tcatgctatt gcttcccgta tggctttcat
     3541 tttctcctcc ttgtataaat cctggttagt tcttgccacg gcggaactca tcgccgcctg
     3601 ccttgcccgc tgctggacag gggctcggct gttgggcact gacaattccg tggtgtttat
     3661 ttgtgaaatt tgtgatgcta ttgctttatt tgtaaccatc tagctttatt tgtgaaattt
     3721 gtgatgctat tgctttattt gtaaccatta taagctgcaa taaacaagtt aacaacaaca
     3781 attgcattca ttttatgttt caggttcagg gggagatgtg ggaggttttt taaacaagtg
     3841 tctggtgagg gtcttcggta ccaagaagac ctagtcacgt caggtacctt gggccgcagg
     3901 aacccctagt gatggagttg gccactccct ctctgcgcgc tcgctcgctc actgaggccg
     3961 ggcgaccaaa ggtcgcccga cgcccgggct ttgcccgagc ggcctcagtg agcgagcgag
     4021 cgcgcagctg cctgcaggac atgtgagcaa aaggccagca aaaggccagg aaccgtaaaa
     4081 aggccgcgtt gctggcgttt ttccataggc tccgcccccc tgacgagcat cacaaaaatc
     4141 gacgctcaag tcagaggtgg cgaaacccga caggactata aagataccag gcgtttcccc
     4201 ctggaagctc cctcgtgcgc tctcctgttc cgaccctgcc gcttaccgga tacctgtccg
     4261 cctttctccc ttcgggaagc gtggcgcttt ctcatagctc acgctgtagg tatctcagtt
     4321 cggtgtaggt cgttcgctcc aagctgggct gtgtgcacga accccccgtt cagcccgacc
     4381 gctgcgcctt atccggtaac tatcgtcttg agtccaaccc ggtaagacac gacttatcgc
     4441 cactggcagc agccactggt aacaggatta gcagagcgag gtatgtaggc ggtgctacag
     4501 agttcttgaa gtggtggcct aactacggct acactagaag aacagtattt ggtatctgcg
     4561 ctctgctgaa gccagttacc ttcggaaaaa gagttggtag ctcttgatcc ggcaaacaaa
     4621 ccaccgctgg tagcggtggt ttttttgttt gcaagcagca gattacgcgc agaaaaaaag
     4681 gatctcaaga agatcctttg atcttttcta cggggtctga cgctcagtgg aacgaaaact
     4741 cacgttaagg gattttggtc atgagattat caaaaaggat cttcacctag atccttttaa
     4801 attaaaaatg aagttttaaa tcaatctaaa gtatatatga gtaaacttgg tctgacagtt
     4861 accaatgctt aatcagtgag gcacctatct cagcgatctg tctatttcgt tcatccatag
     4921 ttgcctgact ccccgtcgtg tagataacta cgatacggga gggcttacca tctggcccca
     4981 gtgctgcaat gataccgcgg cttccacgct caccggctcc agatttatca gcaataaacc
     5041 agccagccgg aagggccgag cgcagaagtg gtcctgcaac tttatccgcc tccatccagt
     5101 ctattaattg ttgccgggaa gctagagtaa gtagttcgcc agttaatagt ttgcgcaacg
     5161 ttgttgccat tgctacaggc atcgtggtgt cacgctcgtc gtttggtatg gcttcattca
     5221 gctccggttc ccaacgatca aggcgagtta catgatcccc catgttgtgc aaaaaagcgg
     5281 ttagctcctt cggtcctccg atcgttgtca gaagtaagtt ggccgcagtg ttatcactca
     5341 tggttatggc agcactgcat aattctctta ctgtcatgcc atccgtaaga tgcttttctg
     5401 tgactggtga gtactcaacc aagtcattct gagaatagtg tatgcggcga ccgagttgct
     5461 cttgcccggc gtcaatacgg gataataccg cgccacatag cagaacttta aaagtgctca
     5521 tcattggaaa acgttcttcg gggcgaaaac tctcaaggat cttaccgctg ttgagatcca
     5581 gttcgatgta acccactcgt gcacccaact gatcttcagc atcttttact ttcaccagcg
     5641 tttctgggtg agcaaaaaca ggaaggcaaa atgccgcaaa aaagggaata agggcgacac
     5701 ggaaatgttg aatactcata ctcttccttt ttcaatatta ttgaagcatt tatcagggtt
     5761 attgtctcat gagcggatac atatttgaat gtatttagaa aaataaacaa ataggggttc
     5821 cgcgcacatt tccccgaaaa gtgccacctg acgtctaaga aaccattatt atcatgacat
     5881 taacctataa aaataggcgt atcacgaggc cctttcgtct cgcgcgtttc ggtgatgacg
     5941 gtg
//
