LOCUS       .                       6845 bp    DNA     circular UNK 01-JAN-1980
DEFINITION  .
ACCESSION   <unknown id>
VERSION     <unknown id>
KEYWORDS    .
SOURCE      .
  ORGANISM  .
            .
FEATURES             Location/Qualifiers
     CDS             727..753
                     /product="HA (human influenza hemagglutinin) epitope tag"
                     /transl_table=1
                     /translation="YPYDVPDYA"
                     /codon_start=1
                     /label="HA"
                     /note="color: #cc99b2"
     misc_feature    4030..4063
                     /label="lox2272-JT1571"
                     /note="color: #ff6600"
     intron          3986..4026
                     /label="Splicing Donor"
                     /note="color: noColor"
     promoter        5060..5164
                     /gene="bla"
                     /label="AmpR promoter"
                     /note="color: #ffffff"
     repeat_region   4108..4248
                     /note="inverted terminal repeat of adeno-associated virus
                     serotype 2"
                     /note="color: #ffe4c4"
                     /rpt_type=inverted
                     /label="AAV2 ITR"
     repeat_region   1..141
                     /note="inverted terminal repeat of adeno-associated virus
                     serotype 2"
                     /note="color: #ffe4c4"
                     /rpt_type=inverted
                     /label="AAV2 ITR"
     rep_origin      4323..4778
                     /note="f1 bacteriophage origin of replication; arrow
                     indicates direction of (+) strand synthesis"
                     /note="color: #ffff00"
                     /direction=RIGHT
                     /label="f1 ori"
     promoter        169..711
                     /note="Chimeric promoter of ef1a and htlv 5' UTR"
                     /note="color: #ffffff"
                     /label="EF1α"
     rep_origin      6196..6784
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
                     replication"
                     /note="color: #ffff00"
                     /direction=RIGHT
                     /label="ori"
     CDS             5165..6025
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /note="color: #ccffcc"
                     /product="β-lactamase"
                     /transl_table=1
                     /translation="MSIQHFRVALIPFFAAFCLPVFA,HPETLVKVKDAEDQLGARVGY
                     IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEY
                     SPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR
                     WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRS
                     ALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGA
                     SLIKHW*"
                     /gene="bla"
                     /codon_start=1
                     /label="AmpR"
     CDS             760..3985
                     /note="isoform a is encoded by transcript variant 2;
                     atrophin 2; atrophin-1 related protein; atrophin-1 like
                     protein; arginine-glutamic acid dipeptide (RE) repeats"
                     /note="color: #993366"
                     /product="arginine-glutamic acid dipeptide repeats protein
                     isoform a"
                     /transl_table=1
                     /protein_id="NP_001036146.1"
                     /translation="TADKDKDKDKEKDRDRDRDREREKRDKARESENSRPRRSCTLEGG
                     AKNYAESDHSEDEDNDNNSATAEESTKKNKKKPPKKKSRYERTDTGEITSYITEDDVVY
                     RPGDCVYIESRRPNTPYFICSIQDFKLVHNSQACCRSPTPALCDPPACSLPVASQPPQH
                     LSEAGRGPVGSKRDHLLMNVKWYYRQSEVPDSVYQHLVQDRHNENDSGRELVITDPVIK
                     NRELFISDYVDTYHAAALRGKCNISHFSDIFAAREFKARVDSFFYILGYNPETRRLNST
                     QGEIRVGPSHQAKLPDLQPFPSPDGDTVTQHEELVWMPGVNDCDLLMYLRAARSMAAFA
                     GMCDGGSTEDGCVAASRDDTTLNALNTLHESGYDAGKALQRLVKKPVPKLIEKCWTEDE
                     VKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKKTPEAASSRAHRRHRRQAVF
                     RRIKTRTASTPVNTPSRPPSSEFLDLSSASEDDFDSEDSEQELKGYACRHCFTTTSKDW
                     HHGGRENILLCTDCRIHFKKYGELPPIEKPVDPPPFMFKPVKEEDDGLSGKHSMRTRRS
                     RGSMSTLRSGRKKQPASPDGRTSPINEDIRSSGRNSPSAASTSSNDSKAETVKKSAKKV
                     KEEASSPLKSNKRQREKVASDTEEADRTSSKKTKTQEISRPNSPSEGEGESSDSRSVND
                     EGSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQAQPPALQAPTGVTPAPSSA
                     PPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALHPQRPPS
                     PHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPF
                     GLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPHIKPP
                     PTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQL
                     MPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAPQPPFAQHPFVPGGPPPITP
                     PTCPSTSTPPAGPGTSAQPPCSGAAAS"
                     /gene="RERE"
                     /gene_synonym="ARG; ARP; ATN1L; DNB1; NEDBEH"
                     /db_xref="{'GI': '112382224', 'CCDS': 'CCDS95.1', 'GeneID':
                     '473', 'HGNC': 'HGNC:9965', 'MIM': '605226'}"
                     /codon_start=1
                     /label="RERE"
ORIGIN
        1 cctgcaggca gctgcgcgct cgctcgctca ctgaggccgc ccgggcaaag cccgggcgtc
       61 gggcgacctt tggtcgcccg gcctcagtga gcgagcgagc gcgcagagag ggagtggcca
      121 actccatcac taggggttcc tgcggccgca cgcgtgtcga ctctagagga tctgcgatcg
      181 ctccggtgcc cgtcagtggg cagagcgcac atcgcccaca gtccccgaga agttgggggg
      241 aggggtcggc aattgaacgg gtgcctagag aaggtggcgc ggggtaaact gggaaagtga
      301 tgtcgtgtac tggctccgcc tttttcccga gggtggggga gaaccgtata taagtgcagt
      361 agtcgccgtg aacgttcttt ttcgcaacgg gtttgccgcc agaacacagc tgaagcttcg
      421 aggggctcgc atctctcctt cacgcgcccg ccgccctacc tgaggccgcc atccacgccg
      481 gttgagtcgc gttctgccgc ctcccgcctg tggtgcctcc tgaactgcgt ccgccgtcta
      541 ggtaagttta aagctcaggt cgagaccggg cctttgtccg gcgctccctt ggagcctacc
      601 tagactcagc cggctctcca cgctttgcct gaccctgctt gctcaactct acgtctttgt
      661 ttcgttttct gttctgcgcc gttacagatc caagctgtga ccggcgccta ccgtacggcc
      721 accatgtacc cttatgacgt acctgactat gctggatcta cagcggacaa agacaaagac
      781 aaagacaaag agaaggaccg ggaccgagac cgggaccgag agagagagaa aagagacaaa
      841 gcaagagaga gtgagaattc aaggccacgc cggagctgta ccttggaagg aggagccaaa
      901 aattatgctg agagtgatca cagtgaagac gaggacaatg acaacaatag tgccaccgca
      961 gaggagtcca cgaagaagaa taagaagaaa ccaccgaaaa aaaagtctcg ttatgaaagg
     1021 acagataccg gtgagataac atcctacatc actgaagatg atgtggtcta cagaccagga
     1081 gactgtgtgt atatcgagag tcggaggcca aacacaccgt atttcatctg tagcattcaa
     1141 gacttcaaac tggtccacaa ctcccaggcc tgttgcagat ctccaactcc tgctttgtgt
     1201 gaccccccag catgctctct gccggtggca tcacagccac cacagcatct ttctgaagcc
     1261 gggagagggc ctgtagggag taagagggac catctcctca tgaacgtcaa atggtactac
     1321 cgtcaatctg aggttccaga ttctgtgtat cagcatttgg ttcaggatcg acataatgaa
     1381 aatgactctg gaagagaact tgtcattaca gacccagtta tcaagaaccg agagctcttc
     1441 atttctgatt acgttgacac ttaccatgct gctgccctta gagggaagtg taacatctcc
     1501 catttttctg acatatttgc tgctagagag tttaaagccc gagtggattc atttttctac
     1561 atattaggat ataaccctga gacaaggagg ctgaacagta cccaggggga gattcgtgtc
     1621 ggtcctagtc atcaggccaa acttccagat ctgcaaccat ttccttctcc agatggtgat
     1681 acagtgaccc aacatgagga actggtctgg atgcctggag ttaacgactg tgacctcctt
     1741 atgtacttga gggcagcaag gagcatggcg gcatttgcag gaatgtgtga tggaggctct
     1801 acagaggacg gctgtgtcgc agcctctcgg gatgacacca ctctgaatgc actgaacaca
     1861 ctgcatgaaa gcggttacga tgctggcaaa gccctgcagc gcctggtgaa gaagcctgtg
     1921 cccaagctca tcgagaagtg ctggaccgag gacgaagtga aacgcttcgt taagggactc
     1981 aggcagtacg ggaagaactt cttcagaatt agaaaggagc tgcttcccaa taaggaaaca
     2041 ggggagctga tcaccttcta ttactattgg aagaagaccc ccgaagcagc cagctcccga
     2101 gcccatcgta ggcaccgcag gcaggccgtg ttcaggagga ttaagactcg caccgcgtcc
     2161 acacccgtca acacaccctc cagacccccg tccagtgaat tcttggacct aagttcagcc
     2221 agtgaagatg acttcgacag tgaggacagt gagcaggagc tgaaggggta cgcctgccgc
     2281 cactgcttca ccaccacctc caaagattgg caccacggag gccgggagaa catcctgctt
     2341 tgcaccgact gtcgcatcca cttcaagaaa tacggtgagc tcccgcccat tgagaagccc
     2401 gtggacccgc caccgtttat gttcaaaccc gtcaaggaag aggatgatgg gctcagtggg
     2461 aagcatagca tgaggacacg gcggagtcgg ggctcgatgt cgacactacg cagtggtcgg
     2521 aagaagcagc cagccagccc tgatggtcgc acctcaccca tcaatgaaga catccgctcc
     2581 agcggccgga actcccccag cgctgccagt acctccagca atgacagtaa agcagagaca
     2641 gtgaagaagt cggccaagaa ggtgaaggag gaagcctctt cccctcttaa gagtaacaaa
     2701 cgccagcggg agaaggtggc ctctgatacg gaggaggctg acaggaccag ctccaagaag
     2761 acaaaaacgc aggagatcag caggcccaac tcgccatctg aaggtgaggg agagagttca
     2821 gacagtcgca gcgtcaacga tgagggtagc agtgacccca aagacatcga ccaggacaat
     2881 cgcagcacgt ccccgagcat ccccagcccc caggacaatg agagtgactc ggactcgtca
     2941 gcccagcagc agatgctgca ggcccagccc ccagccttgc aggctcccac tggggtcacc
     3001 ccagctccct cctcagctcc tccagggacc cctcagctgc ccacgccagg gcccacgccc
     3061 tctgccactg cagttccccc acagggctcc cccacggcct cccaggcccc taaccagcca
     3121 caggctccca cagcgcctgt tccccacacc cacatccaac aggcaccggc cttgcacccc
     3181 cagcggccgc cctcaccgca tcccccgccg catccctcgc cacatccccc gctgcagcct
     3241 ctgactgggt cggcgggcca gccttctgca ccctctcatg cccagccccc actgcacggt
     3301 cagggcccac ccggccctca cagcctgcag gctgggcccc tgctgcagca cccaggcccc
     3361 ccacagccct ttggcctccc tccccaggcc tcccaaggcc aggcccctct ggggacctcc
     3421 ccagcagcag cgtaccctca cacctccctg cagctgccag cctctcagtc agcgctgcag
     3481 tcccaacagc ctccacggga gcagcccctg ccaccagcgc ccttggccat gccccacatc
     3541 aagcccccgc ctaccactcc catcccccag ctgccggcgc cacaggccca caagcaccct
     3601 ccccacctct cggggccctc acccttctcc atgaatgcca acctgcctcc ccctccagcc
     3661 ctgaagcccc tgagctccct gtccacacat caccccccgt cggctcaccc cccacccctg
     3721 caactcatgc ctcagagcca gccattgccc tcctcgcccg cccagccccc cgggctgacc
     3781 cagagccaga acctgccccc gccccctgcc tcccaccccc ctacaggcct ccaccaggtg
     3841 gccccccaac ccccgtttgc tcagcacccc tttgtccctg gaggccctcc tcccatcacc
     3901 cctccgacct gcccctccac ctctacccca ccggcgggac ctggcacctc ggcccagcca
     3961 ccctgctctg gtgcggcggc ttcaggtaag tatcaaggtt acaagacagg tttaaggaga
     4021 ccaataagct attattcgta taggatactt tatacgaagt tattaagtta tggagaccgg
     4081 tgtggcacgt gcggaccgag cggccgcagg aacccctagt gatggagttg gccactccct
     4141 ctctgcgcgc tcgctcgctc actgaggccg ggcgaccaaa ggtcgcccga cgcccgggct
     4201 ttgcccgggc ggcctcagtg agcgagcgag cgcgcagctg cctgcagggg cgcctgatgc
     4261 ggtattttct ccttacgcat ctgtgcggta tttcacaccg catacgtcaa agcaaccata
     4321 gtacgcgccc tgtagcggcg cattaagcgc ggcgggtgtg gtggttacgc gcagcgtgac
     4381 cgctacactt gccagcgccc tagcgcccgc tcctttcgct ttcttccctt cctttctcgc
     4441 cacgttcgcc ggctttcccc gtcaagctct aaatcggggg ctccctttag ggttccgatt
     4501 tagtgcttta cggcacctcg accccaaaaa acttgatttg ggtgatggtt cacgtagtgg
     4561 gccatcgccc tgatagacgg tttttcgccc tttgacgttg gagtccacgt tctttaatag
     4621 tggactcttg ttccaaactg gaacaacact caaccctatc tcgggctatt cttttgattt
     4681 ataagggatt ttgccgattt cggcctattg gttaaaaaat gagctgattt aacaaaaatt
     4741 taacgcgaat tttaacaaaa tattaacgtt tacaatttta tggtgcactc tcagtacaat
     4801 ctgctctgat gccgcatagt taagccagcc ccgacacccg ccaacacccg ctgacgcgcc
     4861 ctgacgggct tgtctgctcc cggcatccgc ttacagacaa gctgtgaccg tctccgggag
     4921 ctgcatgtgt cagaggtttt caccgtcatc accgaaacgc gcgagacgaa agggcctcgt
     4981 gatacgccta tttttatagg ttaatgtcat gataataatg gtttcttaga cgtcaggtgg
     5041 cacttttcgg ggaaatgtgc gcggaacccc tatttgttta tttttctaaa tacattcaaa
     5101 tatgtatccg ctcatgagac aataaccctg ataaatgctt caataatatt gaaaaaggaa
     5161 gagtatgagt attcaacatt tccgtgtcgc ccttattccc ttttttgcgg cattttgcct
     5221 tcctgttttt gctcacccag aaacgctggt gaaagtaaaa gatgctgaag atcagttggg
     5281 tgcacgagtg ggttacatcg aactggatct caacagcggt aagatccttg agagttttcg
     5341 ccccgaagaa cgttttccaa tgatgagcac ttttaaagtt ctgctatgtg gcgcggtatt
     5401 atcccgtatt gacgccgggc aagagcaact cggtcgccgc atacactatt ctcagaatga
     5461 cttggttgag tactcaccag tcacagaaaa gcatcttacg gatggcatga cagtaagaga
     5521 attatgcagt gctgccataa ccatgagtga taacactgcg gccaacttac ttctgacaac
     5581 gatcggagga ccgaaggagc taaccgcttt tttgcacaac atgggggatc atgtaactcg
     5641 ccttgatcgt tgggaaccgg agctgaatga agccatacca aacgacgagc gtgacaccac
     5701 gatgcctgta gcaatggcaa caacgttgcg caaactatta actggcgaac tacttactct
     5761 agcttcccgg caacaattaa tagactggat ggaggcggat aaagttgcag gaccacttct
     5821 gcgctcggcc cttccggctg gctggtttat tgctgataaa tctggagccg gtgagcgtgg
     5881 gtctcgcggt atcattgcag cactggggcc agatggtaag ccctcccgta tcgtagttat
     5941 ctacacgacg gggagtcagg caactatgga tgaacgaaat agacagatcg ctgagatagg
     6001 tgcctcactg attaagcatt ggtaactgtc agaccaagtt tactcatata tactttagat
     6061 tgatttaaaa cttcattttt aatttaaaag gatctaggtg aagatccttt ttgataatct
     6121 catgaccaaa atcccttaac gtgagttttc gttccactga gcgtcagacc ccgtagaaaa
     6181 gatcaaagga tcttcttgag atcctttttt tctgcgcgta atctgctgct tgcaaacaaa
     6241 aaaaccaccg ctaccagcgg tggtttgttt gccggatcaa gagctaccaa ctctttttcc
     6301 gaaggtaact ggcttcagca gagcgcagat accaaatact gtccttctag tgtagccgta
     6361 gttaggccac cacttcaaga actctgtagc accgcctaca tacctcgctc tgctaatcct
     6421 gttaccagtg gctgctgcca gtggcgataa gtcgtgtctt accgggttgg actcaagacg
     6481 atagttaccg gataaggcgc agcggtcggg ctgaacgggg ggttcgtgca cacagcccag
     6541 cttggagcga acgacctaca ccgaactgag atacctacag cgtgagctat gagaaagcgc
     6601 cacgcttccc gaagggagaa aggcggacag gtatccggta agcggcaggg tcggaacagg
     6661 agagcgcacg agggagcttc cagggggaaa cgcctggtat ctttatagtc ctgtcgggtt
     6721 tcgccacctc tgacttgagc gtcgattttt gtgatgctcg tcaggggggc ggagcctatg
     6781 gaaaaacgcc agcaacgcgg cctttttacg gttcctggcc ttttgctggc cttttgctca
     6841 catgt
//
