LOCUS       .                       5674 bp    DNA     circular UNK 01-JAN-1980
DEFINITION  .
ACCESSION   <unknown id>
VERSION     <unknown id>
KEYWORDS    .
SOURCE      .
  ORGANISM  .
            .
FEATURES             Location/Qualifiers
     CDS             724..2814
                     /protein_id="NP_116750.1"
                     /note="isoform c precursor is encoded by transcript variant
                     c; protocadherin-S; protocadherin 11X; protocadherin on the
                     X chromosome; protein phosphatase 1, regulatory subunit
                     119; Protocadherin-11 Y-linked; Protocadherin on the Y
                     chromosome; Protocadherin prostate cancer;
                     Protocadherin-22; Protocadherin-PC"
                     /note="color: #993366"
                     /translation="MDLLSGTYIFAVLLACVVFHSGAQEKNYTIREEMPENVLIGDLLK
                     DLNLSLIPNKSLTTAMQFKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDE
                     HCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAA
                     VDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVE
                     DGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGEN
                     AKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAM
                     VLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCF
                     TDHEIPFRLRPVFSNQFLLETAAYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKD
                     ENDNAPVFTQSFVTVSIPENNSPGIQLTKVSAMDADSGPNAKINYLLGPDAPPEFSLDC
                     RTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYN
                     FYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPNISFDREK
                     QESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPSNCSYELVLPSTNPGTV
                     VFQ"
                     /gene="PCDH11X"
                     /db_xref="{'GI': '14589920', 'CCDS': 'CCDS14461.1',
                     'GeneID': '27328', 'HGNC': 'HGNC:8656', 'MIM': '300246'}"
                     /product="protocadherin-11 X-linked isoform c precursor"
                     /codon_start=1
                     /gene_synonym="PCDH-X; PCDH-Y; PCDH11; PCDH11Y; PCDH22;
                     PCDHX; PPP1R119"
                     /transl_table=1
                     /label="PCDH11X"
     CDS             3994..4854
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /note="color: #ccffcc"
                     /translation="MSIQHFRVALIPFFAAFCLPVFA,HPETLVKVKDAEDQLGARVGY
                     IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEY
                     SPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR
                     WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRS
                     ALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGA
                     SLIKHW*"
                     /gene="bla"
                     /product="β-lactamase"
                     /codon_start=1
                     /transl_table=1
                     /label="AmpR"
     rep_origin      5025..5613
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
                     replication"
                     /note="color: #ffff00"
                     /direction=RIGHT
                     /label="ori"
     promoter        169..711
                     /note="Chimeric promoter of ef1a and htlv 5' UTR"
                     /note="color: #ffffff"
                     /label="EF1α"
     rep_origin      3152..3607
                     /note="f1 bacteriophage origin of replication; arrow
                     indicates direction of (+) strand synthesis"
                     /note="color: #ffff00"
                     /direction=RIGHT
                     /label="f1 ori"
     repeat_region   1..141
                     /note="inverted terminal repeat of adeno-associated virus
                     serotype 2"
                     /note="color: #ffe4c4"
                     /rpt_type=inverted
                     /label="AAV2 ITR"
     repeat_region   2937..3077
                     /note="inverted terminal repeat of adeno-associated virus
                     serotype 2"
                     /note="color: #ffe4c4"
                     /rpt_type=inverted
                     /label="AAV2 ITR"
     promoter        3889..3993
                     /gene="bla"
                     /label="AmpR promoter"
                     /note="color: #ffffff"
     intron          2815..2855
                     /label="Splicing Donor"
                     /note="color: noColor"
     misc_feature    2859..2892
                     /label="lox2272-JT1571"
                     /note="color: #ff6600"
ORIGIN
        1 cctgcaggca gctgcgcgct cgctcgctca ctgaggccgc ccgggcaaag cccgggcgtc
       61 gggcgacctt tggtcgcccg gcctcagtga gcgagcgagc gcgcagagag ggagtggcca
      121 actccatcac taggggttcc tgcggccgca cgcgtgtcga ctctagagga tctgcgatcg
      181 ctccggtgcc cgtcagtggg cagagcgcac atcgcccaca gtccccgaga agttgggggg
      241 aggggtcggc aattgaacgg gtgcctagag aaggtggcgc ggggtaaact gggaaagtga
      301 tgtcgtgtac tggctccgcc tttttcccga gggtggggga gaaccgtata taagtgcagt
      361 agtcgccgtg aacgttcttt ttcgcaacgg gtttgccgcc agaacacagc tgaagcttcg
      421 aggggctcgc atctctcctt cacgcgcccg ccgccctacc tgaggccgcc atccacgccg
      481 gttgagtcgc gttctgccgc ctcccgcctg tggtgcctcc tgaactgcgt ccgccgtcta
      541 ggtaagttta aagctcaggt cgagaccggg cctttgtccg gcgctccctt ggagcctacc
      601 tagactcagc cggctctcca cgctttgcct gaccctgctt gctcaactct acgtctttgt
      661 ttcgttttct gttctgcgcc gttacagatc caagctgtga ccggcgccta ccgtacggcc
      721 accatggact tgttgtccgg gacgtacatt ttcgcggtcc tgctagcatg cgtggtgttc
      781 cactctggcg cccaggagaa aaactacacc atccgagaag aaatgccaga aaacgtcctg
      841 ataggcgact tgttgaaaga ccttaacttg tcgctgattc caaacaagtc cttgacaact
      901 gctatgcagt tcaagctagt gtacaagacc ggagatgtgc cactgattcg aattgaagag
      961 gatactggtg agatcttcac tactggcgct cgcattgatc gtgagaaatt atgtgctggt
     1021 atcccaaggg atgagcattg cttttatgaa gtggaggttg ccattttgcc ggatgaaata
     1081 tttagactgg ttaagatacg ttttctgata gaagatataa atgataatgc accattgttc
     1141 ccagcaacag ttatcaacat atcaattcca gagaactcgg ctataaactc taaatatact
     1201 ctcccagcgg ctgttgatcc tgacgtagga ataaacggag ttcaaaacta cgaactaatt
     1261 aagagtcaaa acatttttgg cctcgatgtc attgaaacac cagaaggaga caagatgcca
     1321 caactgattg ttcaaaagga gttagatagg gaagagaagg atacctacgt gatgaaagta
     1381 aaggttgaag atggtggctt tcctcaaaga tccagtactg ctattttgca agtgagtgtt
     1441 actgatacaa atgacaacca cccagtcttt aaggagacag agattgaagt cagtatacca
     1501 gaaaatgctc ctgtaggcac ttcagtgaca cagctccatg ccacagatgc tgacataggt
     1561 gaaaatgcca agatccactt ctctttcagc aatctagtct ccaacattgc caggagatta
     1621 tttcacctca atgccaccac tggacttatc acaatcaaag aaccactgga tagggaagaa
     1681 acaccaaacc acaagttact ggttttggca agtgatggtg gattgatgcc agcaagagca
     1741 atggtgctgg taaatgttac agatgtcaat gataatgtcc catccattga cataagatac
     1801 atcgtcaatc ctgtcaatga cacagttgtt ctttcagaaa atattccact caacaccaaa
     1861 attgctctca taactgtgac ggataaggat gcggaccata atggcagggt gacatgcttc
     1921 acagatcatg aaatcccttt cagattaagg ccagtattca gtaatcagtt cctcctggag
     1981 actgcagcat atcttgacta tgagtccaca aaagaatatg ccattaaatt actggctgca
     2041 gatgctggca aacctccttt gaatcagtca gcaatgctct tcatcaaagt gaaagatgaa
     2101 aatgacaatg ctccagtttt cacccagtct ttcgtaactg tttctattcc tgagaataac
     2161 tctcctggca tccagttgac gaaagtaagt gcaatggatg cagacagtgg gcctaatgct
     2221 aagatcaatt acctgctagg ccctgatgct ccacctgaat tcagcctgga ttgtcgtaca
     2281 ggcatgctga ctgtagtgaa gaaactagat agagaaaaag aggataaata tttattcaca
     2341 attctggcaa aagataacgg ggtaccaccc ttaaccagca atgtcacagt ctttgtaagc
     2401 attattgatc agaatgacaa tagcccagtt ttcactcaca atgaatacaa cttctatgtc
     2461 ccagaaaacc ttccaaggca tggtacagta ggactaatca ctgtaactga tcctgattat
     2521 ggagacaatt ctgcagttac gctctccatt ttagatgaga atgatgactt caccattgat
     2581 tcacaaactg gtgtcatccg accaaatatt tcatttgata gagaaaaaca agaatcttac
     2641 actttctatg taaaggctga ggatggtggt agagtatcac gttcttcaag tgccaaagta
     2701 accataaatg tggttgatgt caatgacaac aaaccagttt tcattgtccc tccttccaac
     2761 tgttcttatg aattggttct accgtccact aatccaggca cagtggtctt tcaggtaagt
     2821 atcaaggtta caagacaggt ttaaggagac caataagcta ttattcgtat aggatacttt
     2881 atacgaagtt attaagttat ggagaccggt gtggcacgtg cggaccgagc ggccgcagga
     2941 acccctagtg atggagttgg ccactccctc tctgcgcgct cgctcgctca ctgaggccgg
     3001 gcgaccaaag gtcgcccgac gcccgggctt tgcccgggcg gcctcagtga gcgagcgagc
     3061 gcgcagctgc ctgcaggggc gcctgatgcg gtattttctc cttacgcatc tgtgcggtat
     3121 ttcacaccgc atacgtcaaa gcaaccatag tacgcgccct gtagcggcgc attaagcgcg
     3181 gcgggtgtgg tggttacgcg cagcgtgacc gctacacttg ccagcgccct agcgcccgct
     3241 cctttcgctt tcttcccttc ctttctcgcc acgttcgccg gctttccccg tcaagctcta
     3301 aatcgggggc tccctttagg gttccgattt agtgctttac ggcacctcga ccccaaaaaa
     3361 cttgatttgg gtgatggttc acgtagtggg ccatcgccct gatagacggt ttttcgccct
     3421 ttgacgttgg agtccacgtt ctttaatagt ggactcttgt tccaaactgg aacaacactc
     3481 aaccctatct cgggctattc ttttgattta taagggattt tgccgatttc ggcctattgg
     3541 ttaaaaaatg agctgattta acaaaaattt aacgcgaatt ttaacaaaat attaacgttt
     3601 acaattttat ggtgcactct cagtacaatc tgctctgatg ccgcatagtt aagccagccc
     3661 cgacacccgc caacacccgc tgacgcgccc tgacgggctt gtctgctccc ggcatccgct
     3721 tacagacaag ctgtgaccgt ctccgggagc tgcatgtgtc agaggttttc accgtcatca
     3781 ccgaaacgcg cgagacgaaa gggcctcgtg atacgcctat ttttataggt taatgtcatg
     3841 ataataatgg tttcttagac gtcaggtggc acttttcggg gaaatgtgcg cggaacccct
     3901 atttgtttat ttttctaaat acattcaaat atgtatccgc tcatgagaca ataaccctga
     3961 taaatgcttc aataatattg aaaaaggaag agtatgagta ttcaacattt ccgtgtcgcc
     4021 cttattccct tttttgcggc attttgcctt cctgtttttg ctcacccaga aacgctggtg
     4081 aaagtaaaag atgctgaaga tcagttgggt gcacgagtgg gttacatcga actggatctc
     4141 aacagcggta agatccttga gagttttcgc cccgaagaac gttttccaat gatgagcact
     4201 tttaaagttc tgctatgtgg cgcggtatta tcccgtattg acgccgggca agagcaactc
     4261 ggtcgccgca tacactattc tcagaatgac ttggttgagt actcaccagt cacagaaaag
     4321 catcttacgg atggcatgac agtaagagaa ttatgcagtg ctgccataac catgagtgat
     4381 aacactgcgg ccaacttact tctgacaacg atcggaggac cgaaggagct aaccgctttt
     4441 ttgcacaaca tgggggatca tgtaactcgc cttgatcgtt gggaaccgga gctgaatgaa
     4501 gccataccaa acgacgagcg tgacaccacg atgcctgtag caatggcaac aacgttgcgc
     4561 aaactattaa ctggcgaact acttactcta gcttcccggc aacaattaat agactggatg
     4621 gaggcggata aagttgcagg accacttctg cgctcggccc ttccggctgg ctggtttatt
     4681 gctgataaat ctggagccgg tgagcgtggg tctcgcggta tcattgcagc actggggcca
     4741 gatggtaagc cctcccgtat cgtagttatc tacacgacgg ggagtcaggc aactatggat
     4801 gaacgaaata gacagatcgc tgagataggt gcctcactga ttaagcattg gtaactgtca
     4861 gaccaagttt actcatatat actttagatt gatttaaaac ttcattttta atttaaaagg
     4921 atctaggtga agatcctttt tgataatctc atgaccaaaa tcccttaacg tgagttttcg
     4981 ttccactgag cgtcagaccc cgtagaaaag atcaaaggat cttcttgaga tccttttttt
     5041 ctgcgcgtaa tctgctgctt gcaaacaaaa aaaccaccgc taccagcggt ggtttgtttg
     5101 ccggatcaag agctaccaac tctttttccg aaggtaactg gcttcagcag agcgcagata
     5161 ccaaatactg tccttctagt gtagccgtag ttaggccacc acttcaagaa ctctgtagca
     5221 ccgcctacat acctcgctct gctaatcctg ttaccagtgg ctgctgccag tggcgataag
     5281 tcgtgtctta ccgggttgga ctcaagacga tagttaccgg ataaggcgca gcggtcgggc
     5341 tgaacggggg gttcgtgcac acagcccagc ttggagcgaa cgacctacac cgaactgaga
     5401 tacctacagc gtgagctatg agaaagcgcc acgcttcccg aagggagaaa ggcggacagg
     5461 tatccggtaa gcggcagggt cggaacagga gagcgcacga gggagcttcc agggggaaac
     5521 gcctggtatc tttatagtcc tgtcgggttt cgccacctct gacttgagcg tcgatttttg
     5581 tgatgctcgt caggggggcg gagcctatgg aaaaacgcca gcaacgcggc ctttttacgg
     5641 ttcctggcct tttgctggcc ttttgctcac atgt
//
