LOCUS       .                       6467 bp    DNA     circular UNK 01-JAN-1980
DEFINITION  .
ACCESSION   <unknown id>
VERSION     <unknown id>
KEYWORDS    .
SOURCE      .
  ORGANISM  .
            .
FEATURES             Location/Qualifiers
     CDS             760..3607
                     /db_xref="{'GI': '68299795', 'CCDS': 'CCDS34204.1',
                     'GeneID': '1105', 'HGNC': 'HGNC:1915', 'MIM': '602118'}"
                     /gene="CHD1"
                     /codon_start=1
                     /transl_table=1
                     /EC_number="3.6.4.12"
                     /product="chromodomain-helicase-DNA-binding protein 1
                     isoform 2"
                     /note="isoform 2 is encoded by transcript variant 2;
                     ATP-dependent helicase CHD1"
                     /note="color: #993366"
                     /gene_synonym="CHD-1; PILBOS"
                     /translation="NGHSDEESVRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQ
                     SGSSDSDSGSESGSQSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAILKKQ
                     QQQQQQQQHQASSNSGSEEDSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDS
                     ESEEEREKSSCDETESDYEPKNKVKSRKPQNRSKSKNGKKILGQKKRQIDSSEEDDDEE
                     DYDNDKRSSRRQATVNVSYKEDEEMKTDSDDLLEVCGEDVPQPEEEEFETIERFMDCRI
                     GRKGATGATTTIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQ
                     NVRGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQ
                     KSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSRNQSKTTPFKDCKVLKQ
                     RPRFVALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTIS
                     FLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWT
                     HHQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSN
                     HRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLL
                     RRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME
                     LKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQM
                     VRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGIN
                     LASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMV
                     LDHLVIQRMDTTGKTVLHT"
                     /protein_id="NP_001261.2"
                     /label="CHD1"
     CDS             4787..5647
                     /gene="bla"
                     /codon_start=1
                     /transl_table=1
                     /product="β-lactamase"
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /note="color: #ccffcc"
                     /translation="MSIQHFRVALIPFFAAFCLPVFA,HPETLVKVKDAEDQLGARVGY
                     IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEY
                     SPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR
                     WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRS
                     ALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGA
                     SLIKHW*"
                     /label="AmpR"
     rep_origin      5818..6406
                     /direction=RIGHT
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
                     replication"
                     /note="color: #ffff00"
                     /label="ori"
     promoter        169..711
                     /note="Chimeric promoter of ef1a and htlv 5' UTR"
                     /note="color: #ffffff"
                     /label="EF1α"
     rep_origin      3945..4400
                     /direction=RIGHT
                     /note="f1 bacteriophage origin of replication; arrow
                     indicates direction of (+) strand synthesis"
                     /note="color: #ffff00"
                     /label="f1 ori"
     repeat_region   1..141
                     /rpt_type=inverted
                     /note="inverted terminal repeat of adeno-associated virus
                     serotype 2"
                     /note="color: #ffe4c4"
                     /label="AAV2 ITR"
     repeat_region   3730..3870
                     /rpt_type=inverted
                     /note="inverted terminal repeat of adeno-associated virus
                     serotype 2"
                     /note="color: #ffe4c4"
                     /label="AAV2 ITR"
     promoter        4682..4786
                     /gene="bla"
                     /label="AmpR promoter"
                     /note="color: #ffffff"
     intron          3608..3648
                     /label="Splicing Donor"
                     /note="color: noColor"
     misc_feature    3652..3685
                     /label="lox2272-JT1571"
                     /note="color: #ff6600"
     CDS             727..753
                     /codon_start=1
                     /transl_table=1
                     /product="HA (human influenza hemagglutinin) epitope tag"
                     /translation="YPYDVPDYA"
                     /label="HA"
                     /note="color: #cc99b2"
ORIGIN
        1 cctgcaggca gctgcgcgct cgctcgctca ctgaggccgc ccgggcaaag cccgggcgtc
       61 gggcgacctt tggtcgcccg gcctcagtga gcgagcgagc gcgcagagag ggagtggcca
      121 actccatcac taggggttcc tgcggccgca cgcgtgtcga ctctagagga tctgcgatcg
      181 ctccggtgcc cgtcagtggg cagagcgcac atcgcccaca gtccccgaga agttgggggg
      241 aggggtcggc aattgaacgg gtgcctagag aaggtggcgc ggggtaaact gggaaagtga
      301 tgtcgtgtac tggctccgcc tttttcccga gggtggggga gaaccgtata taagtgcagt
      361 agtcgccgtg aacgttcttt ttcgcaacgg gtttgccgcc agaacacagc tgaagcttcg
      421 aggggctcgc atctctcctt cacgcgcccg ccgccctacc tgaggccgcc atccacgccg
      481 gttgagtcgc gttctgccgc ctcccgcctg tggtgcctcc tgaactgcgt ccgccgtcta
      541 ggtaagttta aagctcaggt cgagaccggg cctttgtccg gcgctccctt ggagcctacc
      601 tagactcagc cggctctcca cgctttgcct gaccctgctt gctcaactct acgtctttgt
      661 ttcgttttct gttctgcgcc gttacagatc caagctgtga ccggcgccta ccgtacggcc
      721 accatgtacc cttatgacgt acctgactat gctggatcta atggacacag tgatgaagaa
      781 agtgttagaa acagtagtgg agaatcaagc cagtcggatg atgattctgg gtcagcttca
      841 ggctctggat ctggttcgag ttctggaagc agtagtgatg gaagcagtag ccagtcaggt
      901 agcagtgact ctgactccgg atctgaatca ggcagtcagt cagagtctga gtcagacact
      961 tcccgagaaa acaaagttca agcaaaacca ccgaaagttg atggagctga gttttggaaa
     1021 tctagtccta gtattctggc cgttcagaga tctgcaatcc tcaagaagca gcaacagcag
     1081 cagcagcaac aacaacatca agcctcatct aatagcggat cagaagagga ttcctctagc
     1141 agtgaagatt ccgatgactc atcaagtgag gtcaaaagga aaaagcataa agatgaagat
     1201 tggcaaatgt ctgggtcagg atctccatct cagtctggtt cagattcaga atctgaagaa
     1261 gagagagaga aaagcagttg tgatgaaaca gaatctgatt atgagccaaa aaacaaagtc
     1321 aaaagcagaa aacctcaaaa tagatctaag tcaaaaaatg gaaagaagat tcttggacaa
     1381 aaaaagagac agattgattc atctgaggag gatgatgatg aagaagatta tgataatgat
     1441 aaaagaagtt ctcgtcgcca agcaactgtt aatgttagct ataaggagga tgaagaaatg
     1501 aaaacagatt ctgatgacct actggaagtc tgtggagagg atgttcctca acctgaggaa
     1561 gaggaatttg aaaccataga aagatttatg gattgtcgga ttgggagaaa aggagctact
     1621 ggtgctacta caaccatcta tgcagttgaa gcagatggtg acccaaatgc aggctttgaa
     1681 aaaaacaaag aaccaggaga gattcagtat ttaattaaat ggaaaggatg gtcccatatc
     1741 cacaacactt gggagacaga agaaaccctc aagcagcaga atgttagagg aatgaaaaaa
     1801 ttggataatt ataagaaaaa agatcaggaa acaaaaagat ggttgaaaaa tgcctctcca
     1861 gaagatgtgg aatattataa ttgccagcaa gaacttacag atgatctaca taaacagtat
     1921 caaatagtgg aacgtataat tgctcattcc aatcaaaagt cagcagctgg ttatcctgat
     1981 tattactgca aatggcaggg ccttccatac tcagagtgca gctgggaaga tggagctctc
     2041 atttccaaaa agtttcaagc atgcattgat gagtatttta gcaggaacca atcaaaaacc
     2101 actcctttta aagattgcaa agtattaaaa caaaggccaa ggtttgtagc cctgaagaag
     2161 cagccatcct atattggagg acatgagggc ttagaattaa gagattatca actgaatggt
     2221 ttaaattggc ttgctcattc ttggtgcaaa ggaaatagtt gcatactcgc tgatgaaatg
     2281 ggccttggaa aaacaataca gacgatctca tttctgaatt atttgtttca tgaacatcaa
     2341 ttatatggac cttttttatt ggtagtaccg ctctccactc ttacttcctg gcaaagggaa
     2401 attcagactt gggcttctca aatgaatgct gtggtttatt taggtgacat taacagcaga
     2461 aacatgataa gaactcatga atggacgcat catcagacca aacggttaaa atttaatata
     2521 ttgttaacaa cttatgaaat tttattaaaa gataaggcat tccttggagg tctaaattgg
     2581 gcatttatag gtgttgatga agcacaccga ttaaagaatg atgactccct tctgtataaa
     2641 actttaatag attttaaatc caatcatcgt ctccttatca ctggaactcc tctacagaat
     2701 tccctcaaag agctctggtc tttgctacat ttcattatgc cagaaaagtt ttcttcctgg
     2761 gaagattttg aagaagaaca tggcaaaggg agagaatatg gttatgcaag ccttcacaag
     2821 gagcttgagc catttctgtt acgccgagtt aagaaagatg tggaaaaatc tcttcctgcc
     2881 aaggttgagc agattttaag aatggaaatg agtgctttac agaaacaata ttacaaatgg
     2941 attttaacta ggaattacaa agccctcagc aaaggttcca agggcagtac ctcaggcttt
     3001 ttgaacatta tgatggagct aaagaaatgt tgtaaccatt gctacctcat taaaccacca
     3061 gataataatg aattctataa taaacaggag gccttacaac acttaattcg tagtagcgga
     3121 aaattgattc ttcttgacaa gctattaatt cgcctaagag aacgaggcaa tcgagttctt
     3181 attttttcac aaatggtgcg gatgttagat atacttgcag aatatttgaa atatcgtcaa
     3241 ttcccctttc aaagattaga tggatcaata aaaggagaac tgaggaaaca agctctagat
     3301 cattttaatg ctgagggatc agaggatttt tgctttttgc tgtccacaag agctggaggt
     3361 ctagggatta atttagcctc tgctgacact gttgttatat ttgattccga ttggaatcca
     3421 cagaatgatc ttcaggcaca ggctagagcc catcgaattg ggcaaaagaa acaggtgaat
     3481 atttatcgtc tagttacaaa gggatcagtt gaagaagata ttcttgaaag ggcgaaaaag
     3541 aagatggttt tagatcatct tgtaattcaa agaatggaca caactgggaa gacagtacta
     3601 catacaggta agtatcaagg ttacaagaca ggtttaagga gaccaataag ctattattcg
     3661 tataggatac tttatacgaa gttattaagt tatggagacc ggtgtggcac gtgcggaccg
     3721 agcggccgca ggaaccccta gtgatggagt tggccactcc ctctctgcgc gctcgctcgc
     3781 tcactgaggc cgggcgacca aaggtcgccc gacgcccggg ctttgcccgg gcggcctcag
     3841 tgagcgagcg agcgcgcagc tgcctgcagg ggcgcctgat gcggtatttt ctccttacgc
     3901 atctgtgcgg tatttcacac cgcatacgtc aaagcaacca tagtacgcgc cctgtagcgg
     3961 cgcattaagc gcggcgggtg tggtggttac gcgcagcgtg accgctacac ttgccagcgc
     4021 cctagcgccc gctcctttcg ctttcttccc ttcctttctc gccacgttcg ccggctttcc
     4081 ccgtcaagct ctaaatcggg ggctcccttt agggttccga tttagtgctt tacggcacct
     4141 cgaccccaaa aaacttgatt tgggtgatgg ttcacgtagt gggccatcgc cctgatagac
     4201 ggtttttcgc cctttgacgt tggagtccac gttctttaat agtggactct tgttccaaac
     4261 tggaacaaca ctcaacccta tctcgggcta ttcttttgat ttataaggga ttttgccgat
     4321 ttcggcctat tggttaaaaa atgagctgat ttaacaaaaa tttaacgcga attttaacaa
     4381 aatattaacg tttacaattt tatggtgcac tctcagtaca atctgctctg atgccgcata
     4441 gttaagccag ccccgacacc cgccaacacc cgctgacgcg ccctgacggg cttgtctgct
     4501 cccggcatcc gcttacagac aagctgtgac cgtctccggg agctgcatgt gtcagaggtt
     4561 ttcaccgtca tcaccgaaac gcgcgagacg aaagggcctc gtgatacgcc tatttttata
     4621 ggttaatgtc atgataataa tggtttctta gacgtcaggt ggcacttttc ggggaaatgt
     4681 gcgcggaacc cctatttgtt tatttttcta aatacattca aatatgtatc cgctcatgag
     4741 acaataaccc tgataaatgc ttcaataata ttgaaaaagg aagagtatga gtattcaaca
     4801 tttccgtgtc gcccttattc ccttttttgc ggcattttgc cttcctgttt ttgctcaccc
     4861 agaaacgctg gtgaaagtaa aagatgctga agatcagttg ggtgcacgag tgggttacat
     4921 cgaactggat ctcaacagcg gtaagatcct tgagagtttt cgccccgaag aacgttttcc
     4981 aatgatgagc acttttaaag ttctgctatg tggcgcggta ttatcccgta ttgacgccgg
     5041 gcaagagcaa ctcggtcgcc gcatacacta ttctcagaat gacttggttg agtactcacc
     5101 agtcacagaa aagcatctta cggatggcat gacagtaaga gaattatgca gtgctgccat
     5161 aaccatgagt gataacactg cggccaactt acttctgaca acgatcggag gaccgaagga
     5221 gctaaccgct tttttgcaca acatggggga tcatgtaact cgccttgatc gttgggaacc
     5281 ggagctgaat gaagccatac caaacgacga gcgtgacacc acgatgcctg tagcaatggc
     5341 aacaacgttg cgcaaactat taactggcga actacttact ctagcttccc ggcaacaatt
     5401 aatagactgg atggaggcgg ataaagttgc aggaccactt ctgcgctcgg cccttccggc
     5461 tggctggttt attgctgata aatctggagc cggtgagcgt gggtctcgcg gtatcattgc
     5521 agcactgggg ccagatggta agccctcccg tatcgtagtt atctacacga cggggagtca
     5581 ggcaactatg gatgaacgaa atagacagat cgctgagata ggtgcctcac tgattaagca
     5641 ttggtaactg tcagaccaag tttactcata tatactttag attgatttaa aacttcattt
     5701 ttaatttaaa aggatctagg tgaagatcct ttttgataat ctcatgacca aaatccctta
     5761 acgtgagttt tcgttccact gagcgtcaga ccccgtagaa aagatcaaag gatcttcttg
     5821 agatcctttt tttctgcgcg taatctgctg cttgcaaaca aaaaaaccac cgctaccagc
     5881 ggtggtttgt ttgccggatc aagagctacc aactcttttt ccgaaggtaa ctggcttcag
     5941 cagagcgcag ataccaaata ctgtccttct agtgtagccg tagttaggcc accacttcaa
     6001 gaactctgta gcaccgccta catacctcgc tctgctaatc ctgttaccag tggctgctgc
     6061 cagtggcgat aagtcgtgtc ttaccgggtt ggactcaaga cgatagttac cggataaggc
     6121 gcagcggtcg ggctgaacgg ggggttcgtg cacacagccc agcttggagc gaacgaccta
     6181 caccgaactg agatacctac agcgtgagct atgagaaagc gccacgcttc ccgaagggag
     6241 aaaggcggac aggtatccgg taagcggcag ggtcggaaca ggagagcgca cgagggagct
     6301 tccaggggga aacgcctggt atctttatag tcctgtcggg tttcgccacc tctgacttga
     6361 gcgtcgattt ttgtgatgct cgtcaggggg gcggagccta tggaaaaacg ccagcaacgc
     6421 ggccttttta cggttcctgg ccttttgctg gccttttgct cacatgt
//
