LOCUS Exported 7276 bp ds-DNA circular SYN 12-MAY-2021 DEFINITION wt VP2/VP3 only to participate in capsid assembly; no ITR's. ACCESSION . VERSION . KEYWORDS pRC_RR_VP2/3 SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 7276) AUTHORS Judd J, Wei F, Nguyen PQ, Tartaglia LJ, Agbandje-McKenna M, Silberg JJ, Suh J TITLE Random Insertion of mCherry Into VP3 Domain of Adeno-associated Virus Yields Fluorescent Capsids With no Loss of Infectivity. JOURNAL Mol Ther Nucleic Acids. 2012 Nov 13;1:e54. doi: 10.1038/mtna.2012.46. PUBMED 23629029 REFERENCE 2 (bases 1 to 7276) AUTHORS . TITLE Direct Submission JOURNAL Exported May 12, 2021 from SnapGene Server 1.1.58 http://www.snapgene.com FEATURES Location/Qualifiers source 1..7276 /organism="synthetic DNA construct" /mol_type="other DNA" rep_origin complement(3..458) /direction=LEFT /label=f1 ori /note="f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis" primer_bind complement(140..161) /label=F1ori-F /note="F1 origin, forward primer" primer_bind 352..371 /label=F1ori-R /note="F1 origin, reverse primer" primer_bind 585..607 /label=M13/pUC Forward /note="In lacZ gene" primer_bind 599..616 /label=M13 Forward /note="In lacZ gene. Also called M13-F20 or M13 (-21) Forward" primer_bind 600..616 /label=M13 fwd /note="common sequencing primer, one of multiple similar variants" primer_bind 626..645 /label=T7 /note="T7 promoter, forward primer" promoter 626..644 /label=T7 promoter /note="promoter for bacteriophage T7 RNA polymerase" primer_bind 669..685 /label=pBluescriptKS /note="For pBluescript vector" primer_bind 670..686 /label=KS primer /note="common sequencing primer, one of multiple similar variants" primer_bind complement(720..736) /label=SK primer /note="common sequencing primer, one of multiple similar variants" primer_bind complement(720..736) /label=pBluescriptSK /note="For pBluescript vector" CDS 4798..4809 /codon_start=1 /product="WELQut protease recognition and cleavage site" /label=WELQut site /translation="WELQ" primer_bind complement(5088..5108) /label=T3 /note="T3 promoter, forward primer" promoter complement(5088..5106) /label=T3 promoter /note="promoter for bacteriophage T3 RNA polymerase" primer_bind complement(5127..5143) /label=M13 rev /note="common sequencing primer, one of multiple similar variants" primer_bind complement(5127..5143) /label=M13 Reverse /note="In lacZ gene. Also called M13-rev" primer_bind complement(5140..5162) /label=M13/pUC Reverse /note="In lacZ gene" protein_bind 5151..5167 /label=lac operator /bound_moiety="lac repressor encoded by lacI" /note="The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-beta-D-thiogalactopyranoside (IPTG)." promoter complement(5175..5205) /label=lac promoter /note="promoter for the E. coli lac operon" protein_bind 5220..5241 /label=CAP binding site /bound_moiety="E. coli catabolite activator protein" /note="CAP binding activates transcription in the presence of cAMP." primer_bind complement(5358..5375) /label=L4440 /note="L4440 vector, forward primer" rep_origin complement(5529..6117) /direction=LEFT /label=ori /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" primer_bind complement(5609..5628) /label=pBR322ori-F /note="pBR322 origin, forward primer" CDS complement(6288..7148) /codon_start=1 /gene="bla" /product="beta-lactamase" /label=AmpR /note="confers resistance to ampicillin, carbenicillin, and related antibiotics" /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS LIKHW" primer_bind 6911..6930 /label=Amp-R /note="Ampicillin resistance gene, reverse primer" promoter complement(7149..7253) /gene="bla" /label=AmpR promoter ORIGIN 1 ctaaattgta agcgttaata ttttgttaaa attcgcgtta aatttttgtt aaatcagctc 61 attttttaac caataggccg aaatcggcaa aatcccttat aaatcaaaag aatagaccga 121 gatagggttg agtgttgttc cagtttggaa caagagtcca ctattaaaga acgtggactc 181 caacgtcaaa gggcgaaaaa ccgtctatca gggcgatggc ccactacgtg aaccatcacc 241 ctaatcaagt tttttggggt cgaggtgccg taaagcacta aatcggaacc ctaaagggag 301 cccccgattt agagcttgac ggggaaagcc ggcgaacgtg gcgagaaagg aagggaagaa 361 agcgaaagga gcgggcgcta gggcgctggc aagtgtagcg gtcacgctgc gcgtaaccac 421 cacacccgcc gcgcttaatg cgccgctaca gggcgcgtcc cattcgccat tcaggctgcg 481 caactgttgg gaagggcgat cggtgcgggc ctcttcgcta ttacgccagc tggcgaaagg 541 gggatgtgct gcaaggcgat taagttgggt aacgccaggg ttttcccagt cacgacgttg 601 taaaacgacg gccagtgagc gcgcgtaata cgactcacta tagggcgaat tgggtaccgg 661 gccccccctc gaggtcgacg gtatcgataa gcttgatatc gaattcctgc agcccggggg 721 atccactagt tctagagtcc tgtattagag gtcacgtgag tgttttgcga cattttgcga 781 caccatgtgg tcacgctggg tatttaagcc cgagtgagca cgcagggtct ccattttgaa 841 gcgggaggtt tgaacgcgca gccgccatgc cggggtttta cgagattgtg attaaggtcc 901 ccagcgacct tgacgagcat ctgcccggca tttctgacag ctttgtgaac tgggtggccg 961 agaaggaatg ggagttgccg ccagattctg acatggatct gaatctgatt gagcaggcac 1021 ccctgaccgt ggccgagaag ctgcagcgcg actttctgac ggaatggcgt cgtgtgagta 1081 aggccccgga ggcccttttc tttgtgcaat ttgagaaggg agagagctac ttccacatgc 1141 acgtgctcgt ggaaaccacc ggggtgaaat ctatggtttt gggacgtttc ctgagtcaga 1201 ttcgcgaaaa actgattcag agaatttacc gcgggatcga gccgactttg ccaaactggt 1261 tcgcggtcac aaagaccaga aatggtgccg gaggcgggaa caaggtggtg gatgagtgct 1321 acatccccaa ttacttgctc cccaaaaccc agcctgagct ccagtgggcg tggactaata 1381 tggaacagta tttaagcgcc tgtttgaatc tcacggagcg taaacggttg gtggcgcagc 1441 atctgacgca cgtgtcgcag acgcaggagc agaacaaaga gaatcagaat cccaattctg 1501 atgcgccggt gatcagatca aaaacttcag ccaggtacat ggagctggtc gggtggctcg 1561 tggacaaggg gattacctcg gagaagcagt ggatacagga ggaccaggcc tcatacatct 1621 ccttcaatgc ggcctccaac tcgcggtccc aaatcaaggc tgccttggac aatgcgggaa 1681 agattatgag cctgactaaa accgcccccg actacctggt gggccagcag cccgtggagg 1741 acatttccag caatcggatt tataaaattt tggaactaaa cgggtacgat ccccaatatg 1801 cggcttccgt ctttctggga tgggccacga aaaagttcgg caagaggaac accatctggc 1861 tgtttgggcc tgcaactacc gggaagacca acatcgcgga ggccatagcc cacactgtgc 1921 ccttctacgg gtgcgtaaac tggaccaatg agaactttcc cttcaacgac tgtgtcgaca 1981 agatggtgat ctggtgggag gaggggaaga tgaccgccaa ggtcgtggag tcggccaaag 2041 ccattctcgg aggaagcaag gtgcgcgtgg accagaaatg caagtcctcg gcccagatag 2101 acccgactcc cgtgatcgtc acctccaaca ccaacatgtg cgccgtgatt gacgggaact 2161 caacgacctt cgaacaccag cagccgttgc aagaccggat gttcaaattt gaactcaccc 2221 gccgtctgga tcatgacttt gggaaggtca ccaagcagga agtcaaagac tttttccggt 2281 gggcaaagga tcacgtggtt gaggtggagc atgaattcta cgtcaaaaag ggtggagcca 2341 agaaaagacc cgcccccagt gacgcagata taagtgagcc caaacgggtg cgcgagtcag 2401 ttgcgcagcc atcgacgtca gacgcggaag cttcgatcaa ctacgcagac aggtaccaaa 2461 acaaatgttc tcgtcacgtg ggcatgaatc tgatgctgtt tccctgcaga caatgcgaga 2521 gaatgaatca gaattcaaat atctgcttca ctcacggaca gaaagactgt ttagagtgct 2581 ttcccgtgtc agaatctcaa cccgtttctg tcgtcaaaaa ggcgtatcag aaactgtgct 2641 acattcatca tatcatggga aaggtgccag acgcttgcac tgcctgcgat ctggtcaatg 2701 tggatttgga tgactgcatc tttgaacaat aaatgattta aatcaggtaa ggctgccgat 2761 ggttatcttc cagattggct cgaggacact ctctctgaag gaataagaca gtggtggaag 2821 ctcaaacctg gcccaccacc accaaagccc gcagagcggc ataaggacga cagcaggggt 2881 cttgtgcttc ctgggtacaa gtacctcgga cccttcaacg gactcgacaa gggagagccg 2941 gtcaacgagg cagacgccgc ggccctcgag cacgacaaag cctacgaccg gcagctcgac 3001 agcggagaca acccgtacct caagtacaac cacgccgacg cggagtttca ggagcgcctt 3061 aaagaagata cgtcttttgg gggcaacctc ggacgagcag tcttccaggc gaaaaagagg 3121 gttcttgaac ctctgggcct ggttgaggaa cctgttaaga cggctccggg aaaaaagagg 3181 ccggtagagc actctcctgt ggagccagac tcctcctcgg gaaccggaaa ggcgggccag 3241 cagcctgcaa gaaaaagatt gaattttggt cagactggag acgcagactc agtacctgac 3301 ccccagcctc tcggacagcc accagcagcc ccctctggtc tgggaactaa taccatggct 3361 acaggcagtg gcgcaccaat ggcagacaat aacgagggtg ccgacggagt gggtaattcc 3421 tcgggaaatt ggcattgcga ttccacatgg atgggcgaca gagtcatcac caccagcacc 3481 cgaacctggg ccctgcccac ctacaacaac cacctctaca aacaaatttc cagccaatca 3541 ggagcctcga acgacaatca ctactttggc tacagcaccc cttgggggta ttttgacttc 3601 aacagattcc actgccactt ttcaccacgt gactggcaaa gactcatcaa caacaactgg 3661 ggattccgac ccaagagact caacttcaag ctctttaaca ttcaagtcaa agaggtcacg 3721 cagaatgacg gtacgacgac gattgccaat aaccttacca gcacggttca ggtgtttact 3781 gactcggagt accagctccc gtacgtcctc ggctcggcgc atcaaggatg cctcccgccg 3841 ttcccagcag acgtcttcat ggtgccacag tatggatacc tcaccctgaa caacgggagt 3901 caggcagtag gacgctcttc attttactgc ctggagtact ttccttctca gatgctgcgt 3961 accggaaaca actttacctt cagctacact tttgaggacg ttcctttcca cagcagctac 4021 gctcacagcc agagtctgga ccgtctcatg aatcctctca tcgaccagta cctgtattac 4081 ttgagcagaa caaacactcc aagtggaacc accacgcagt caaggcttca gttttctcag 4141 gccggagcga gtgacattcg ggaccagtct aggaactggc ttcctggacc ctgttaccgc 4201 cagcagcgag tatcaaagac atctgcggat aacaacaaca gtgaatactc gtggactgga 4261 gctaccaagt accacctcaa tggcagagac tctctggtga atccgggccc ggctatggca 4321 agccacaagg acgatgaaga aaagtttttt cctcagagcg gggttctcat ctttgggaag 4381 caaggctcag agaaaacaaa tgtggacatt gaaaaggtca tgattacaga cgaagaggaa 4441 atcaggacaa ccaatcccgt ggctacggag cagtatggtt ctgtatctac caacctccag 4501 agaggcaaca gacaagcagc taccgcagat gtcaacacac aaggcgttct tccaggcatg 4561 gtctggcagg acagagatgt gtaccttcag gggcccatct gggcaaagat tccacacacg 4621 gacggacatt ttcacccctc tcccctcatg ggtggattcg gacttaaaca ccctcctcca 4681 cagattctca tcaagaacac cccggtgcct gcgaatcctt cgaccacctt cagtgcggca 4741 aagtttgctt ccttcatcac acagtactcc acgggacagg tcagcgtgga gatcgagtgg 4801 gagctgcaga aggaaaacag caaacgctgg aatcccgaaa ttcagtacac ttccaactac 4861 aacaagtctg ttaatgtgga ctttactgtg gacactaatg gcgtgtattc agagcctcgc 4921 cccattggca ccagatacct gactcgtaat ctgtaattgg caggtcttgt taatcaataa 4981 accgtttaat tcgtttcagt tgaactttgg tctctgcgta tttctttctt atctagtttc 5041 catgctctag agcggccgcc accgcggtgg agctccagct tttgttccct ttagtgaggg 5101 ttaattgcgc gcttggcgta atcatggtca tagctgtttc ctgtgtgaaa ttgttatccg 5161 ctcacaattc cacacaacat acgagccgga agcataaagt gtaaagcctg gggtgcctaa 5221 tgagtgagct aactcacatt aattgcgttg cgctcactgc ccgctttcca gtcgggaaac 5281 ctgtcgtgcc agctgcatta atgaatcggc caacgcgcgg ggagaggcgg tttgcgtatt 5341 gggcgctctt ccgcttcctc gctcactgac tcgctgcgct cggtcgttcg gctgcggcga 5401 gcggtatcag ctcactcaaa ggcggtaata cggttatcca cagaatcagg ggataacgca 5461 ggaaagaaca tgtgagcaaa aggccagcaa aaggccagga accgtaaaaa ggccgcgttg 5521 ctggcgtttt tccataggct ccgcccccct gacgagcatc acaaaaatcg acgctcaagt 5581 cagaggtggc gaaacccgac aggactataa agataccagg cgtttccccc tggaagctcc 5641 ctcgtgcgct ctcctgttcc gaccctgccg cttaccggat acctgtccgc ctttctccct 5701 tcgggaagcg tggcgctttc tcatagctca cgctgtaggt atctcagttc ggtgtaggtc 5761 gttcgctcca agctgggctg tgtgcacgaa ccccccgttc agcccgaccg ctgcgcctta 5821 tccggtaact atcgtcttga gtccaacccg gtaagacacg acttatcgcc actggcagca 5881 gccactggta acaggattag cagagcgagg tatgtaggcg gtgctacaga gttcttgaag 5941 tggtggccta actacggcta cactagaagg acagtatttg gtatctgcgc tctgctgaag 6001 ccagttacct tcggaaaaag agttggtagc tcttgatccg gcaaacaaac caccgctggt 6061 agcggtggtt tttttgtttg caagcagcag attacgcgca gaaaaaaagg atctcaagaa 6121 gatcctttga tcttttctac ggggtctgac gctcagtgga acgaaaactc acgttaaggg 6181 attttggtca tgagattatc aaaaaggatc ttcacctaga tccttttaaa ttaaaaatga 6241 agttttaaat caatctaaag tatatatgag taaacttggt ctgacagtta ccaatgctta 6301 atcagtgagg cacctatctc agcgatctgt ctatttcgtt catccatagt tgcctgactc 6361 cccgtcgtgt agataactac gatacgggag ggcttaccat ctggccccag tgctgcaatg 6421 ataccgcgag acccacgctc accggctcca gatttatcag caataaacca gccagccgga 6481 agggccgagc gcagaagtgg tcctgcaact ttatccgcct ccatccagtc tattaattgt 6541 tgccgggaag ctagagtaag tagttcgcca gttaatagtt tgcgcaacgt tgttgccatt 6601 gctacaggca tcgtggtgtc acgctcgtcg tttggtatgg cttcattcag ctccggttcc 6661 caacgatcaa ggcgagttac atgatccccc atgttgtgca aaaaagcggt tagctccttc 6721 ggtcctccga tcgttgtcag aagtaagttg gccgcagtgt tatcactcat ggttatggca 6781 gcactgcata attctcttac tgtcatgcca tccgtaagat gcttttctgt gactggtgag 6841 tactcaacca agtcattctg agaatagtgt atgcggcgac cgagttgctc ttgcccggcg 6901 tcaatacggg ataataccgc gccacatagc agaactttaa aagtgctcat cattggaaaa 6961 cgttcttcgg ggcgaaaact ctcaaggatc ttaccgctgt tgagatccag ttcgatgtaa 7021 cccactcgtg cacccaactg atcttcagca tcttttactt tcaccagcgt ttctgggtga 7081 gcaaaaacag gaaggcaaaa tgccgcaaaa aagggaataa gggcgacacg gaaatgttga 7141 atactcatac tcttcctttt tcaatattat tgaagcattt atcagggtta ttgtctcatg 7201 agcggataca tatttgaatg tatttagaaa aataaacaaa taggggttcc gcgcacattt 7261 ccccgaaaag tgccac //