LOCUS Exported 5308 bp ds-DNA circular SYN 17-JAN-2024 DEFINITION Mammalian expression of ultrasensitive protein calcium sensor. ACCESSION . VERSION . KEYWORDS pGP-CMV-GCaMP6s SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 5308) AUTHORS Chen TW, Wardill TJ, Sun Y, Pulver SR, Renninger SL, Baohan A, Schreiter ER, Kerr RA, Orger MB, Jayaraman V, Looger LL, Svoboda K, Kim DS TITLE Ultrasensitive fluorescent proteins for imaging neuronal activity. JOURNAL Nature. 2013 Jul 18;499(7458):295-300. doi: 10.1038/nature12354. PUBMED 23868258 REFERENCE 2 (bases 1 to 5308) AUTHORS . TITLE Direct Submission JOURNAL Exported Jan 17, 2024 from SnapGene Server 1.1.58 http://www.snapgene.com FEATURES Location/Qualifiers source 1..5308 /organism="synthetic DNA construct" /mol_type="other DNA" primer_bind 191..211 /label=pBABE 3' /note="SV40 enhancer, reverse primer for pBABE vectors" promoter complement(236..340) /gene="bla" /label=AmpR promoter rep_origin 367..822 /direction=RIGHT /label=f1 ori /note="f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis" primer_bind complement(454..473) /label=F1ori-R /note="F1 origin, reverse primer" primer_bind 664..685 /label=F1ori-F /note="F1 origin, forward primer" polyA_signal 829..950 /label=SV40 poly(A) signal /note="SV40 polyadenylation signal" primer_bind complement(840..859) /label=EBV-rev /note="SV40 polyA terminator, reverse primer" primer_bind 894..913 /label=SV40pA-R /note="SV40 polyA, reverse primer" CDS complement(1072..2424) /codon_start=1 /product="improved fluorescent protein-based calcium sensor (Chen et al., 2013)" /label=GCaMP6s /translation="MGSHHHHHHGMASMTGGQQMGRDLYDDDDKDLATMVDSSRRKWNK TGHAVRAIGRLSSLENVYIKADKQKNGIKANFHIRHNIEDGGVQLAYHYQQNTPIGDGP VLLPDNHYLSVQSKLSKDPNEKRDHMVLLEFVTAAGITLGMDELYKGGTGGSMVSKGEE LFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLT YGVQCFSRYPDHMKQHDFFKSAMPEGYIQERTIFFKDDGNYKTRAEVKFEGDTLVNRIE LKGIDFKEDGNILGHKLEYNLPDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRS LGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKYRDTEEEIREAFGVFDKDGN GYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK" primer_bind 1631..1650 /label=EXFP-R /note="For distinguishing EGFP variants, reverse primer" primer_bind 1890..1911 /label=EGFP-N /note="EGFP, reverse primer" primer_bind complement(2017..2038) /label=EGFP-C /note="EGFP, forward primer" regulatory 2319..2328 /regulatory_class="other" /note="vertebrate consensus sequence for strong initiation of translation (Kozak, 1987)" regulatory 2421..2430 /regulatory_class="other" /note="vertebrate consensus sequence for strong initiation of translation (Kozak, 1987)" promoter complement(2478..2681) /label=CMV promoter /note="human cytomegalovirus (CMV) immediate early promoter" primer_bind complement(2507..2527) /label=CMV-F /note="Human CMV immediate early promoter, forward primer" enhancer 2682..2985 /label=CMV enhancer /note="human cytomegalovirus immediate early enhancer" rep_origin complement(3160..3748) /direction=LEFT /label=ori /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" primer_bind complement(3240..3259) /label=pBR322ori-F /note="pBR322 origin, forward primer" polyA_signal 4077..4124 /label=HSV TK poly(A) signal /note="herpes simplex virus thymidine kinase polyadenylation signal (Cole and Stacy, 1985)" primer_bind 4149..4168 /label=TK-pA-R /note="Thymidine kinase polyA, reverse primer" CDS complement(4356..5150) /codon_start=1 /gene="aph(3')-II (or nptII)" /product="aminoglycoside phosphotransferase from Tn5" /label=NeoR/KanR /note="confers resistance to neomycin, kanamycin, and G418 (Geneticin(R))" /translation="MIEQDGLHAGSPAAWVERLFGYDWAQQTIGCSDAAVFRLSAQGRP VLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLS SHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQ GLAPAELFARLKASMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVADRYQDIA LATRDIAEELGGEWADRFLVLYGIAAPDSQRIAFYRLLDEFF" primer_bind complement(4467..4486) /label=Neo-F /note="Neomycin resistance gene, forward primer" primer_bind 5077..5096 /label=Neo-R /note="Neomycin resistance gene, reverse primer" promoter complement(5185..234) /label=SV40 promoter /note="SV40 enhancer and early promoter" rep_origin 5199..26 /label=SV40 ori /note="SV40 origin of replication" primer_bind complement(5253..5272) /label=SV40pro-F /note="SV40 promoter/origin, forward primer" ORIGIN 1 gaactgggcg gagttagggg cgggatgggc ggagttaggg gcgggactat ggttgctgac 61 taattgagat gcatgctttg catacttctg cctgctgggg agcctgggga ctttccacac 121 ctggttgctg actaattgag atgcatgctt tgcatacttc tgcctgctgg ggagcctggg 181 gactttccac accctaactg acacacattc cacagctggt tctttccgcc tcaggactct 241 tcctttttca atattattga agcatttatc agggttattg tctcatgagc ggatacatat 301 ttgaatgtat ttagaaaaat aaacaaatag gggttccgcg cacatttccc cgaaaagtgc 361 cacctgacgc gccctgtagc ggcgcattaa gcgcggcggg tgtggtggtt acgcgcagcg 421 tgaccgctac acttgccagc gccctagcgc ccgctccttt cgctttcttc ccttcctttc 481 tcgccacgtt cgccggcttt ccccgtcaag ctctaaatcg ggggctccct ttagggttcc 541 gatttagtgc tttacggcac ctcgacccca aaaaacttga ttagggtgat ggttcacgta 601 gtgggccatc gccctgatag acggtttttc gccctttgac gttggagtcc acgttcttta 661 atagtggact cttgttccaa actggaacaa cactcaaccc tatctcggtc tattcttttg 721 atttataagg gattttgccg atttcggcct attggttaaa aaatgagctg atttaacaaa 781 aatttaacgc gaattttaac aaaatattaa cgcttacaat ttacgcctta agatacattg 841 atgagtttgg acaaaccaca actagaatgc agtgaaaaaa atgctttatt tgtgaaattt 901 gtgatgctat tgctttattt gtaaccatta taagctgcaa taaacaagtt aacaacaaca 961 attgcattca ttttatgttt caggttcagg gggaggtgtg ggaggttttt taaagcaagt 1021 aaaacctcta caaatgtggt atggctgatt atgatctaga gtcgcggccg ctcacttcgc 1081 tgtcatcatt tgtacaaact cttcgtagtt tacctgacca tccccatcga tgtctgcttc 1141 cctgatcatt tcatcaacct cttcatctgt taacttctct ccaaggtttg tcatcacgtg 1201 gcgaagctct gctgcactga tgtagccatt gccatcctta tcaaacacac cgaacgcttc 1261 tctaatttct tcttccgtgt ccctgtattt catttttctt gccatcattg tcaggaactc 1321 agggaagtcg attgtgccgt caccgtcggc atctacttca ttgatcatgt cctgcagctc 1381 tgcttctgtg gggttctgcc ccagagaccg catcaccgtc cccagctcct tggttgttat 1441 tgtcccatcc ccgtccttgt caaataggga gaaagcctct ttaaattctg cgatctgctc 1501 ttcagtcagt tggtccggca ggttgtactc cagcttgtgc cccaggatgt tgccgtcctc 1561 cttgaagtcg atgcccttca gctcgatgcg gttcaccagg gtgtcgccct cgaacttcac 1621 ctcggcgcgg gtcttgtagt tgccgtcgtc cttgaagaag atggtgcgct cctggatgta 1681 gccttcgggc atggcggact tgaagaagtc gtgctgcttc atgtggtcgg ggtagcggct 1741 gaagcactgc acgccgtagg tcagggtggt cacgagggtg ggccagggca cgggcagctt 1801 gccggtggtg cagatgaact tcagggtcag cttgccgtag gtggcatcgc cctcaccctc 1861 gccggacacg ctgaacttgt ggccgtttac gtcgccgtcc agctcgacca ggatgggcac 1921 caccccggtg aacagctcct cgcccttgct caccatgctc cctccggtac cgcccttgta 1981 cagctcgtcc atgccgagag tgatcccggc ggcggtcacg aactccagca ggaccatgtg 2041 atcgcgcttc tcgttggggt ctttcgaaag tttggactgc acgctcaggt agtggttgtc 2101 gggcagcagc acggggccgt cgccgatggg ggtgttctgc tggtagtggt aggcgagctg 2161 cacgccgccg tcctcgatgt tgtggcggat gtggaagttc gccttgatgc cgttcttctg 2221 cttgtcggcc ttgatataga cgttctcgag tgagctcagc cgacctatag ctctgactgc 2281 gtgacctgtc ttattccact tacgacgtga tgagtcgacc atggtggcga gatccttatc 2341 gtcatcgtcg tacagatccc gacccatttg ctgtccacca gtcatgctag ccataccatg 2401 atgatgatga tgatgagaac ccatggtggc gagatctgag tccggtagcg ctagcggatc 2461 tgacggttca ctaaaccagc tctgcttata tagacctccc accgtacacg cctaccgccc 2521 atttgcgtca atggggcgga gttgttacga cattttggaa agtcccgttg attttggtgc 2581 caaaacaaac tcccattgac gtcaatgggg tggagacttg gaaatccccg tgagtcaaac 2641 cgctatccac gcccattgat gtactgccaa aaccgcatca ccatggtaat agcgatgact 2701 aatacgtaga tgtactgcca agtaggaaag tcccataagg tcatgtactg ggcataatgc 2761 caggcgggcc atttaccgtc attgacgtca atagggggcg tacttggcat atgatacact 2821 tgatgtactg ccaagtgggc agtttaccgt aaatactcca cccattgacg tcaatggaaa 2881 gtccctattg gcgttactat gggaacatac gtcattattg acgtcaatgg gcgggggtcg 2941 ttgggcggtc agccaggcgg gccatttacc gtaagttatg taacgcggaa ctccatatat 3001 gggctatgaa ctaatgaccc cgtaattgat tactattaat aactaatgca tggcggtaat 3061 acggttatcc acagaatcag gggataacgc aggaaagaac atgtgagcaa aaggccagca 3121 aaaggccagg aaccgtaaaa aggccgcgtt gctggcgttt ttccataggc tccgcccccc 3181 tgacgagcat cacaaaaatc gacgctcaag tcagaggtgg cgaaacccga caggactata 3241 aagataccag gcgtttcccc ctggaagctc cctcgtgcgc tctcctgttc cgaccctgcc 3301 gcttaccgga tacctgtccg cctttctccc ttcgggaagc gtggcgcttt ctcatagctc 3361 acgctgtagg tatctcagtt cggtgtaggt cgttcgctcc aagctgggct gtgtgcacga 3421 accccccgtt cagcccgacc gctgcgcctt atccggtaac tatcgtcttg agtccaaccc 3481 ggtaagacac gacttatcgc cactggcagc agccactggt aacaggatta gcagagcgag 3541 gtatgtaggc ggtgctacag agttcttgaa gtggtggcct aactacggct acactagaag 3601 aacagtattt ggtatctgcg ctctgctgaa gccagttacc ttcggaaaaa gagttggtag 3661 ctcttgatcc ggcaaacaaa ccaccgctgg tagcggtggt ttttttgttt gcaagcagca 3721 gattacgcgc agaaaaaaag gatctcaaga agatcctttg atcttttcta cggggtctga 3781 cgctcagtgg aacgaaaact cacgttaagg gattttggtc atgagattat caaaaaggat 3841 cttcacctag atccttttaa attaaaaatg aagttttaaa tcaatctaaa gtatatatga 3901 gtaacctgag gctatggcag ggcctgccgc cccgacgttg gctgcgagcc ctgggccttc 3961 acccgaactt ggggggtggg gtggggaaaa ggaagaaacg cgggcgtatt ggccccaatg 4021 gggtctcggt ggggtatcga cagagtgcca gccctgggac cgaaccccgc gtttatgaac 4081 aaacgaccca acaccgtgcg ttttattctg tctttttatt gccgtcatag cgcgggttcc 4141 ttccggtatt gtctccttcc gtgtttcagt tagcctcccc ctagggtggg cgaagaactc 4201 cagcatgaga tccccgcgct ggaggatcat ccagccggcg tcccggaaaa cgattccgaa 4261 gcccaacctt tcatagaagg cggcggtgga atcgaaatct cgtgatggca ggttgggcgt 4321 cgcttggtcg gtcatttcga accccagagt cccgctcaga agaactcgtc aagaaggcga 4381 tagaaggcga tgcgctgcga atcgggagcg gcgataccgt aaagcacgag gaagcggtca 4441 gcccattcgc cgccaagctc ttcagcaata tcacgggtag ccaacgctat gtcctgatag 4501 cggtccgcca cacccagccg gccacagtcg atgaatccag aaaagcggcc attttccacc 4561 atgatattcg gcaagcaggc atcgccatgg gtcacgacga gatcctcgcc gtcgggcatg 4621 ctcgccttga gcctggcgaa cagttcggct ggcgcgagcc cctgatgctc ttcgtccaga 4681 tcatcctgat cgacaagacc ggcttccatc cgagtacgtg ctcgctcgat gcgatgtttc 4741 gcttggtggt cgaatgggca ggtagccgga tcaagcgtat gcagccgccg cattgcatca 4801 gccatgatgg atactttctc ggcaggagca aggtgagatg acaggagatc ctgccccggc 4861 acttcgccca atagcagcca gtcccttccc gcttcagtga caacgtcgag cacagctgcg 4921 caaggaacgc ccgtcgtggc cagccacgat agccgcgctg cctcgtcttg cagttcattc 4981 agggcaccgg acaggtcggt cttgacaaaa agaaccgggc gcccctgcgc tgacagccgg 5041 aacacggcgg catcagagca gccgattgtc tgttgtgccc agtcatagcc gaatagcctc 5101 tccacccaag cggccggaga acctgcgtgc aatccatctt gttcaatcat gcgaaacgat 5161 cctcatcctg tctcttgatc gatctttgca aaagcctagg cctccaaaaa agcctcctca 5221 ctacttctgg aatagctcag aggccgaggc ggcctcggcc tctgcataaa taaaaaaaat 5281 tagtcagcca tggggcggag aatgggcg //