LOCUS Exported 4948 bp ds-DNA circular SYN 12-MAY-2021 DEFINITION synthetic circular DNA ACCESSION . VERSION . KEYWORDS piRFP670-N1 SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 4948) AUTHORS Shcherbakova DM, Verkhusha VV TITLE Near-infrared fluorescent proteins for multicolor in vivo imaging. JOURNAL Nat Methods. 2013 Jun 16. doi: 10.1038/nmeth.2521. PUBMED 23770755 REFERENCE 2 (bases 1 to 4948) AUTHORS . TITLE Direct Submission JOURNAL Exported May 12, 2021 from SnapGene Server 1.1.58 http://www.snapgene.com FEATURES Location/Qualifiers source 1..4948 /organism="synthetic DNA construct" /mol_type="other DNA" regulatory 7..16 /regulatory_class="other" /note="vertebrate consensus sequence for strong initiation of translation (Kozak, 1987)" CDS 13..948 /codon_start=1 /product="near-infrared fluorescent protein with an emission peak at 670 nm, engineered from a bacterial phytochrome (Shcherbakova and Verkhusha, 2013)" /label=iRFP670 /note="derived from Rhodopseudomonas palustris RpBphP6" /translation="MARKVDLTSCDREPIHIPGSIQPCGCLLACDAQAVRITRITENAG AFFGRETPRVGELLADYFGETEAHALRNALAQSSDPKRPALIFGWRDGLTGRTFDISLH RHDGTSIIEFEPAAAEQADNPLRLTRQIIARTKELKSLEEMAARVPRYLQAMLGYHRVM LYRFADDGSGMVIGEAKRSDLESFLGQHFPASLVPQQARLLYLKNAIRVVSDSRGISSR IVPEHDASGAALDLSFAHLRSISPCHLEFLRNMGVSASMSLSIIIDGTLWGLIICHHYE PRAVPMAQRVAAEMFADFLSLHFTAAHHQR" polyA_signal 1070..1191 /label=SV40 poly(A) signal /note="SV40 polyadenylation signal" primer_bind complement(1107..1126) /label=SV40pA-R /note="SV40 polyA, reverse primer" primer_bind 1161..1180 /label=EBV-rev /note="SV40 polyA terminator, reverse primer" rep_origin complement(1198..1653) /direction=LEFT /label=f1 ori /note="f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis" primer_bind complement(1335..1356) /label=F1ori-F /note="F1 origin, forward primer" primer_bind 1547..1566 /label=F1ori-R /note="F1 origin, reverse primer" promoter 1680..1784 /gene="bla" /label=AmpR promoter promoter 1786..2143 /label=SV40 promoter /note="SV40 enhancer and early promoter" primer_bind complement(1809..1829) /label=pBABE 3' /note="SV40 enhancer, reverse primer for pBABE vectors" rep_origin 1994..2129 /label=SV40 ori /note="SV40 origin of replication" primer_bind 2056..2075 /label=SV40pro-F /note="SV40 promoter/origin, forward primer" CDS 2178..2972 /codon_start=1 /gene="aph(3')-II (or nptII)" /product="aminoglycoside phosphotransferase from Tn5" /label=NeoR/KanR /note="confers resistance to neomycin, kanamycin, and G418 (Geneticin(R))" /translation="MIEQDGLHAGSPAAWVERLFGYDWAQQTIGCSDAAVFRLSAQGRP VLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLS SHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQ GLAPAELFARLKASMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVADRYQDIA LATRDIAEELGGEWADRFLVLYGIAAPDSQRIAFYRLLDEFF" primer_bind complement(2232..2251) /label=Neo-R /note="Neomycin resistance gene, reverse primer" primer_bind 2842..2861 /label=Neo-F /note="Neomycin resistance gene, forward primer" primer_bind complement(3160..3179) /label=TK-pA-R /note="Thymidine kinase polyA, reverse primer" polyA_signal 3204..3251 /label=HSV TK poly(A) signal /note="herpes simplex virus thymidine kinase polyadenylation signal (Cole and Stacy, 1985)" rep_origin 3580..4168 /direction=RIGHT /label=ori /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" primer_bind 4069..4088 /label=pBR322ori-F /note="pBR322 origin, forward primer" enhancer 4343..4646 /label=CMV enhancer /note="human cytomegalovirus immediate early enhancer" promoter 4647..4850 /label=CMV promoter /note="human cytomegalovirus (CMV) immediate early promoter" primer_bind 4801..4821 /label=CMV-F /note="Human CMV immediate early promoter, forward primer" misc_feature 4873..5 /label=MCS /note="multiple cloning site" ORIGIN 1 ccggtcgcca ccatggcgcg taaggtcgat ctcacctcct gcgatcgcga gccgatccac 61 atccccggca gcattcagcc gtgcggctgc ctgctagcct gcgacgcgca ggcggtgcgg 121 atcacgcgca ttacggaaaa tgccggcgcg ttctttggac gcgaaactcc gcgggtcggt 181 gagctactcg ccgattactt cggcgagacc gaagcccatg cgctgcgcaa cgcactggcg 241 cagtcctccg atccaaagcg accggcgctg atcttcggtt ggcgcgacgg cctgaccggc 301 cgcaccttcg acatctcact gcatcgccat gacggtacat cgatcatcga gttcgagcct 361 gcggcggccg aacaggccga caatccgctg cggctgacgc ggcagatcat cgcgcgcacc 421 aaagaactga agtcgctcga agagatggcc gcacgggtgc cgcgctatct gcaggcgatg 481 ctcggctatc accgcgtgat gttgtaccgc ttcgcggacg acggctccgg gatggtgatc 541 ggcgaggcga agcgcagcga cctcgagagc tttctcggtc agcactttcc ggcgtcgctg 601 gtcccgcagc aggcgcggct actgtacttg aagaacgcga tccgcgtggt ctcggattcg 661 cgcggcatca gcagccggat cgtgcccgag cacgacgcct ccggcgccgc gctcgatctg 721 tcgttcgcgc acctgcgcag catctcgccc tgccatctcg aatttctgcg gaacatgggc 781 gtcagcgcct cgatgtcgct gtcgatcatc attgacggca cgctatgggg attgatcatc 841 tgtcatcatt acgagccgcg tgccgtgccg atggcgcagc gcgtcgcggc cgaaatgttc 901 gccgacttct tatcgctgca cttcaccgcc gcccaccacc aacgctaagc ggccgcgact 961 ctagatcata atcagccata ccacatttgt agaggtttta cttgctttaa aaaacctccc 1021 acacctcccc ctgaacctga aacataaaat gaatgcaatt gttgttgtta acttgtttat 1081 tgcagcttat aatggttaca aataaagcaa tagcatcaca aatttcacaa ataaagcatt 1141 tttttcactg cattctagtt gtggtttgtc caaactcatc aatgtatctt aaggcgtaaa 1201 ttgtaagcgt taatattttg ttaaaattcg cgttaaattt ttgttaaatc agctcatttt 1261 ttaaccaata ggccgaaatc ggcaaaatcc cttataaatc aaaagaatag accgagatag 1321 ggttgagtgt tgttccagtt tggaacaaga gtccactatt aaagaacgtg gactccaacg 1381 tcaaagggcg aaaaaccgtc tatcagggcg atggcccact acgtgaacca tcaccctaat 1441 caagtttttt ggggtcgagg tgccgtaaag cactaaatcg gaaccctaaa gggagccccc 1501 gatttagagc ttgacgggga aagccggcga acgtggcgag aaaggaaggg aagaaagcga 1561 aaggagcggg cgctagggcg ctggcaagtg tagcggtcac gctgcgcgta accaccacac 1621 ccgccgcgct taatgcgccg ctacagggcg cgtcaggtgg cacttttcgg ggaaatgtgc 1681 gcggaacccc tatttgttta tttttctaaa tacattcaaa tatgtatccg ctcatgagac 1741 aataaccctg ataaatgctt caataatatt gaaaaaggaa gagtcctgag gcggaaagaa 1801 ccagctgtgg aatgtgtgtc agttagggtg tggaaagtcc ccaggctccc cagcaggcag 1861 aagtatgcaa agcatgcatc tcaattagtc agcaaccagg tgtggaaagt ccccaggctc 1921 cccagcaggc agaagtatgc aaagcatgca tctcaattag tcagcaacca tagtcccgcc 1981 cctaactccg cccatcccgc ccctaactcc gcccagttcc gcccattctc cgccccatgg 2041 ctgactaatt ttttttattt atgcagaggc cgaggccgcc tcggcctctg agctattcca 2101 gaagtagtga ggaggctttt ttggaggcct aggcttttgc aaagatcgat caagagacag 2161 gatgaggatc gtttcgcatg attgaacaag atggattgca cgcaggttct ccggccgctt 2221 gggtggagag gctattcggc tatgactggg cacaacagac aatcggctgc tctgatgccg 2281 ccgtgttccg gctgtcagcg caggggcgcc cggttctttt tgtcaagacc gacctgtccg 2341 gtgccctgaa tgaactgcaa gacgaggcag cgcggctatc gtggctggcc acgacgggcg 2401 ttccttgcgc agctgtgctc gacgttgtca ctgaagcggg aagggactgg ctgctattgg 2461 gcgaagtgcc ggggcaggat ctcctgtcat ctcaccttgc tcctgccgag aaagtatcca 2521 tcatggctga tgcaatgcgg cggctgcata cgcttgatcc ggctacctgc ccattcgacc 2581 accaagcgaa acatcgcatc gagcgagcac gtactcggat ggaagccggt cttgtcgatc 2641 aggatgatct ggacgaagag catcaggggc tcgcgccagc cgaactgttc gccaggctca 2701 aggcgagcat gcccgacggc gaggatctcg tcgtgaccca tggcgatgcc tgcttgccga 2761 atatcatggt ggaaaatggc cgcttttctg gattcatcga ctgtggccgg ctgggtgtgg 2821 cggaccgcta tcaggacata gcgttggcta cccgtgatat tgctgaagag cttggcggcg 2881 aatgggctga ccgcttcctc gtgctttacg gtatcgccgc tcccgattcg cagcgcatcg 2941 ccttctatcg ccttcttgac gagttcttct gagcgggact ctggggttcg aaatgaccga 3001 ccaagcgacg cccaacctgc catcacgaga tttcgattcc accgccgcct tctatgaaag 3061 gttgggcttc ggaatcgttt tccgggacgc cggctggatg atcctccagc gcggggatct 3121 catgctggag ttcttcgccc accctagggg gaggctaact gaaacacgga aggagacaat 3181 accggaagga acccgcgcta tgacggcaat aaaaagacag aataaaacgc acggtgttgg 3241 gtcgtttgtt cataaacgcg gggttcggtc ccagggctgg cactctgtcg ataccccacc 3301 gagaccccat tggggccaat acgcccgcgt ttcttccttt tccccacccc accccccaag 3361 ttcgggtgaa ggcccagggc tcgcagccaa cgtcggggcg gcaggccctg ccatagcctc 3421 aggttactca tatatacttt agattgattt aaaacttcat ttttaattta aaaggatcta 3481 ggtgaagatc ctttttgata atctcatgac caaaatccct taacgtgagt tttcgttcca 3541 ctgagcgtca gaccccgtag aaaagatcaa aggatcttct tgagatcctt tttttctgcg 3601 cgtaatctgc tgcttgcaaa caaaaaaacc accgctacca gcggtggttt gtttgccgga 3661 tcaagagcta ccaactcttt ttccgaaggt aactggcttc agcagagcgc agataccaaa 3721 tactgttctt ctagtgtagc cgtagttagg ccaccacttc aagaactctg tagcaccgcc 3781 tacatacctc gctctgctaa tcctgttacc agtggctgct gccagtggcg ataagtcgtg 3841 tcttaccggg ttggactcaa gacgatagtt accggataag gcgcagcggt cgggctgaac 3901 ggggggttcg tgcacacagc ccagcttgga gcgaacgacc tacaccgaac tgagatacct 3961 acagcgtgag ctatgagaaa gcgccacgct tcccgaaggg agaaaggcgg acaggtatcc 4021 ggtaagcggc agggtcggaa caggagagcg cacgagggag cttccagggg gaaacgcctg 4081 gtatctttat agtcctgtcg ggtttcgcca cctctgactt gagcgtcgat ttttgtgatg 4141 ctcgtcaggg gggcggagcc tatggaaaaa cgccagcaac gcggcctttt tacggttcct 4201 ggccttttgc tggccttttg ctcacatgtt ctttcctgcg ttatcccctg attctgtgga 4261 taaccgtatt accgccatgc attagttatt aatagtaatc aattacgggg tcattagttc 4321 atagcccata tatggagttc cgcgttacat aacttacggt aaatggcccg cctggctgac 4381 cgcccaacga cccccgccca ttgacgtcaa taatgacgta tgttcccata gtaacgccaa 4441 tagggacttt ccattgacgt caatgggtgg agtatttacg gtaaactgcc cacttggcag 4501 tacatcaagt gtatcatatg ccaagtacgc cccctattga cgtcaatgac ggtaaatggc 4561 ccgcctggca ttatgcccag tacatgacct tatgggactt tcctacttgg cagtacatct 4621 acgtattagt catcgctatt accatggtga tgcggttttg gcagtacatc aatgggcgtg 4681 gatagcggtt tgactcacgg ggatttccaa gtctccaccc cattgacgtc aatgggagtt 4741 tgttttggca ccaaaatcaa cgggactttc caaaatgtcg taacaactcc gccccattga 4801 cgcaaatggg cggtaggcgt gtacggtggg aggtctatat aagcagagct ggtttagtga 4861 accgtcagat ccgctagcgc taccggactc agatctcgag ctcaagcttc gaattctgca 4921 gtcgacggta ccgcgggccc gggatcca //