LOCUS       sequence-410970-        4890 bp    DNA     circular SYN 17-APR-2025
DEFINITION  Direct-expressing SYFP2 in oligodendrocytes AAV Virus.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 4890)
  AUTHORS   Mich JK, Sunil S, Johansen N, Martinez RA, Leytze M, Gore BB, 
            Mahoney JT, Ben-Simon Y, Bishaw Y, Brouner K, Campos J, Canfield R, 
            Casper T, Dee N, Egdorf T, Gary A, Gibson S, Goldy J, Groce EL, 
            Hirschstein D, Loftus L, Lusk N, Malone J, Martin NX, Monet D, 
            Omstead V, Opitz-Araya X, Oster A, Pom CA, Potekhina L, Reding M, 
            Rimorin C, Ruiz A, Sedeno-Cortes AE, Shapovalova NV, Taormina M, 
            Taskin N, Tieu M, Valera Cuevas NJ, Weed N, Way S, Yao Z, McMillen 
            DA, Kunst M, McGraw M, Thyagarajan B, Waters J, Bakken TE, Yao S, 
            Smith KA, Svoboda K, Podgorski K, Kojima Y, Horwitz GD, Zeng H, 
            Daigle TL, Lein ES, Tasic B, Ting JT, Levi BP
  TITLE     Enhancer-AAVs allow genetic access to oligodendrocytes and diverse 
            populations of astrocytes across species
  JOURNAL   bioRxiv 2023.09.20.558718
REFERENCE   2  (bases 1 to 4890)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Apr 17, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; journalName: "bioRxiv 
            2023.09.20.558718"
COMMENT     Sequence Label: AiP12498 -
            pAAV-AiE0395m-minBglobin-SYFP2-WPRE...
FEATURES             Location/Qualifiers
     source          1..4890
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     repeat_region   1..130
                     /label=AAV2 ITR (alternate)
                     /note="Functional equivalent of wild-type AAV2 ITR"
     regulatory      902..911
                     /label=Kozak sequence
                     /note="vertebrate consensus sequence for strong initiation 
                     of translation (Kozak, 1987)"
                     /regulatory_class="other"
     CDS             join(908..910,911..913,914..1624)
                     /codon_start=1
                     /product="monomeric optimized variant of EYFP, identical to
                     mVenus but with L68V (Kremers et al., 2006)"
                     /label=SYFP2
                     /note="mammalian codon-optimized"
                     /translation="MVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTL
                     KLICTTGKLPVPWPTLVTTLGYGVQCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDD
                     GNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYITADKQKNGIK
                     ANFKIRHNIEDGGVQLADHYQQNTPIGDGPVLLPDNHYLSYQSKLSKDPNEKRDHMVLL
                     EFVTAAGITLGMDELYK"
     primer_bind     complement(953..974)
                     /label=EGFP-N
                     /note="EGFP, reverse primer"
     primer_bind     complement(1214..1233)
                     /label=EXFP-R
                     /note="For distinguishing EGFP variants, reverse primer"
     primer_bind     1561..1582
                     /label=EGFP-C
                     /note="EGFP, forward primer"
     primer_bind     complement(1717..1737)
                     /label=WPRE-R
                     /note="WPRE, reverse primer"
     polyA_signal    1924..2035
                     /label=bGH poly(A) signal
                     /note="bovine growth hormone polyadenylation signal"
     repeat_region   2153..2293
                     /label=AAV2 ITR
                     /note="inverted terminal repeat of adeno-associated virus 
                     serotype 2"
     repeat_region   2153..2282
                     /label=AAV2 ITR
     rep_origin      2368..2823
                     /direction=RIGHT
                     /label=f1 ori
                     /note="f1 bacteriophage origin of replication; arrow 
                     indicates direction of (+) strand synthesis"
     primer_bind     complement(2455..2474)
                     /label=F1ori-R
                     /note="F1 origin, reverse primer"
     primer_bind     2665..2686
                     /label=F1ori-F
                     /note="F1 origin, forward primer"
     primer_bind     complement(2840..2859)
                     /label=pRS-marker
                     /note="pRS vectors, use to sequence yeast selectable 
                     marker"
     primer_bind     2959..2981
                     /label=pGEX 3'
                     /note="pGEX vectors, reverse primer"
     primer_bind     complement(3019..3037)
                     /label=pBRforEco
                     /note="pBR322 vectors, upsteam of EcoRI site, forward 
                     primer"
     promoter        3105..3209
                     /gene="bla"
                     /label=AmpR promoter
     CDS             join(3210..3278,3279..4070)
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     primer_bind     complement(3428..3447)
                     /label=Amp-R
                     /note="Ampicillin resistance gene, reverse primer"
     rep_origin      4241..4829
                     /direction=RIGHT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     4730..4749
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
ORIGIN
        1 cctgcaggca gctgcgcgct cgctcgctca ctgaggccgc ccgggcgtcg ggcgaccttt
       61 ggtcgcccgg cctcagtgag cgagcgagcg cgcagagagg gagtggccaa ctccatcact
      121 aggggttcct gcggccgcac gcgtctggcc ttaggtctct ggggccccag cagccccatg
      181 tctgcctcct taaatcggcc ttgaggttaa gtgtgtctct gtctgtctgt ctgtctctct
      241 gtctctctcc agctctgctg aggaagtact aggctctcct cagggcctcg ccgcccacag
      301 taacaggtca ctcagagccc acagtaacag gtcactcaga gcccacagta acaggtcact
      361 cagagtggca ctgctttgct cttgctgttt gtaagagaaa aacacgctaa gcttcggagc
      421 ctggcaccac caggtttggc cactcttgat tatttccctt gttcccaccc ctcttctctt
      481 gccctcaagt cctgaacccc cttcttatca ccctccccca gcccagctgc tgcatgtgcc
      541 aacccctacc cagcagaaaa ggaaggtctt ggaaggggat caatggaggt tctgtgtggg
      601 cttgcagctg aaatggccct gcacacagcc acagatgggc ctctgctccc cctccacatt
      661 tctgcatcaa caaagcgtga ccttgtttag atgacagtcg ccccatgtct cccccatgac
      721 aatgtttgcc ttgcttttgc ctcctagtgg gctgcctcag gacatctctg ttgcctgaga
      781 ctggaaaagg gtgatgggat gggaagcaga gctcgggctg ggcataaaag tcagggcaga
      841 gccatctatt gcttacattt gcttctggga tccagatctt tcgaagctag cgctaccggt
      901 cgccaccatg gtgagcaagg gcgaggagct gttcaccggg gtggtgccca tcctggtcga
      961 gctggacggc gacgtaaacg gccacaagtt cagcgtgtcc ggcgagggcg agggcgatgc
     1021 cacctacggc aagctgaccc tgaagctgat ctgcaccacc ggcaagctgc ccgtgccctg
     1081 gcccaccctc gtgaccaccc tgggctacgg cgtgcagtgc ttcgcccgct accccgacca
     1141 catgaagcag cacgacttct tcaagtccgc catgcccgaa ggctacgtcc aggagcgcac
     1201 catcttcttc aaggacgacg gcaactacaa gacccgcgcc gaggtgaagt tcgagggcga
     1261 caccctggtg aaccgcatcg agctgaaggg catcgacttc aaggaggacg gcaacatcct
     1321 ggggcacaag ctggagtaca actacaacag ccacaacgtc tatatcaccg ccgacaagca
     1381 gaagaacggc atcaaggcca acttcaagat ccgccacaac atcgaggacg gcggcgtgca
     1441 gctcgccgac cactaccagc agaacacccc catcggcgac ggccccgtgc tgctgcccga
     1501 caaccactac ctgagctacc agtccaagct gagcaaagac cccaacgaga agcgcgatca
     1561 catggtcctg ctggagttcg tgaccgccgc cgggatcact ctcggcatgg acgagctgta
     1621 caagtaagtc gacggcgcgc cgcggccgcg aattcgatat cataatcaac ctctggatta
     1681 caaaatttgt gaaagattga ctggtattct taactatgtt gctcctttta cgctatgtgg
     1741 atacgctgct ttaatgcctt tgtatcatgc tattgcttcc cgtatggctt tcattttctc
     1801 ctccttgtat aaatcctggt tagttcttgc cacggcggaa ctcatcgccg cctgccttgc
     1861 ccgctgctgg acaggggctc ggctgttggg cactgacaat tccgtggctc gagagatctt
     1921 cgactgtgcc ttctagttgc cagccatctg ttgtttgccc ctcccccgtg ccttccttga
     1981 ccctggaagg tgccactccc actgtccttt cctaataaaa tgaggaaatt gcatcgcatt
     2041 gtctgagtag gtgtcattct attctggggg gtggggtggg gcaggacagc aagggggagg
     2101 attgggaaga caatagcagg catgagatct cacgtgcgga ccgagcggcc gcaggaaccc
     2161 ctagtgatgg agttggccac tccctctctg cgcgctcgct cgctcactga ggccgggcga
     2221 ccaaaggtcg cccgacgccc gggctttgcc cgggcggcct cagtgagcga gcgagcgcgc
     2281 agctgcctgc aggggcgcct gatgcggtat tttctcctta cgcatctgtg cggtatttca
     2341 caccgcatac gtcaaagcaa ccatagtacg cgccctgtag cggcgcatta agcgcggcgg
     2401 gtgtggtggt tacgcgcagc gtgaccgcta cacttgccag cgccttagcg cccgctcctt
     2461 tcgctttctt cccttccttt ctcgccacgt tcgccggctt tccccgtcaa gctctaaatc
     2521 gggggctccc tttagggttc cgatttagtg ctttacggca cctcgacccc aaaaaacttg
     2581 atttgggtga tggttcacgt agtgggccat cgccctgata gacggttttt cgccctttga
     2641 cgttggagtc cacgttcttt aatagtggac tcttgttcca aactggaaca acactcaact
     2701 ctatctcggg ctattctttt gatttataag ggattttgcc gatttcggtc tattggttaa
     2761 aaaatgagct gatttaacaa aaatttaacg cgaattttaa caaaatatta acgtttacaa
     2821 ttttatggtg cactctcagt acaatctgct ctgatgccgc atagttaagc cagccccgac
     2881 acccgccaac acccgctgac gcgccctgac gggcttgtct gctcccggca tccgcttaca
     2941 gacaagctgt gaccgtctcc gggagctgca tgtgtcagag gttttcaccg tcatcaccga
     3001 aacgcgcgag acgaaagggc ctcgtgatac gcctattttt ataggttaat gtcatgataa
     3061 taatggtttc ttagacgtca ggtggcactt ttcggggaaa tgtgcgcgga acccctattt
     3121 gtttattttt ctaaatacat tcaaatatgt atccgctcat gagacaataa ccctgataaa
     3181 tgcttcaata atattgaaaa aggaagagta tgagtattca acatttccgt gtcgccctta
     3241 ttcccttttt tgcggcattt tgccttcctg tttttgctca cccagaaacg ctggtgaaag
     3301 taaaagatgc tgaagatcag ttgggtgcac gagtgggtta catcgaactg gatctcaaca
     3361 gcggtaagat ccttgagagt tttcgccccg aagaacgttt tccaatgatg agcactttta
     3421 aagttctgct atgtggcgcg gtattatccc gtattgacgc cgggcaagag caactcggtc
     3481 gccgcataca ctattctcag aatgacttgg ttgagtactc accagtcaca gaaaagcatc
     3541 ttacggatgg catgacagta agagaattat gcagtgctgc cataaccatg agtgataaca
     3601 ctgcggccaa cttacttctg acaacgatcg gaggaccgaa ggagctaacc gcttttttgc
     3661 acaacatggg ggatcatgta actcgccttg atcgttggga accggagctg aatgaagcca
     3721 taccaaacga cgagcgtgac accacgatgc ctgtagcaat ggcaacaacg ttgcgcaaac
     3781 tattaactgg cgaactactt actctagctt cccggcaaca attaatagac tggatggagg
     3841 cggataaagt tgcaggacca cttctgcgct cggcccttcc ggctggctgg tttattgctg
     3901 ataaatctgg agccggtgag cgtgggtctc gcggtatcat tgcagcactg gggccagatg
     3961 gtaagccctc ccgtatcgta gttatctaca cgacggggag tcaggcaact atggatgaac
     4021 gaaatagaca gatcgctgag ataggtgcct cactgattaa gcattggtaa ctgtcagacc
     4081 aagtttactc atatatactt tagattgatt taaaacttca tttttaattt aaaaggatct
     4141 aggtgaagat cctttttgat aatctcatga ccaaaatccc ttaacgtgag ttttcgttcc
     4201 actgagcgtc agaccccgta gaaaagatca aaggatcttc ttgagatcct ttttttctgc
     4261 gcgtaatctg ctgcttgcaa acaaaaaaac caccgctacc agcggtggtt tgtttgccgg
     4321 atcaagagct accaactctt tttccgaagg taactggctt cagcagagcg cagataccaa
     4381 atactgttct tctagtgtag ccgtagttag gccaccactt caagaactct gtagcaccgc
     4441 ctacatacct cgctctgcta atcctgttac cagtggctgc tgccagtggc gataagtcgt
     4501 gtcttaccgg gttggactca agacgatagt taccggataa ggcgcagcgg tcgggctgaa
     4561 cggggggttc gtgcacacag cccagcttgg agcgaacgac ctacaccgaa ctgagatacc
     4621 tacagcgtga gctatgagaa agcgccacgc ttcccgaagg gagaaaggcg gacaggtatc
     4681 cggtaagcgg cagggtcgga acaggagagc gcacgaggga gcttccaggg ggaaacgcct
     4741 ggtatcttta tagtcctgtc gggtttcgcc acctctgact tgagcgtcga tttttgtgat
     4801 gctcgtcagg ggggcggagc ctatggaaaa acgccagcaa cgcggccttt ttacggttcc
     4861 tggccttttg ctggcctttt gctcacatgt
//
