LOCUS       sequence-472739-        2712 bp    DNA     circular SYN 07-AUG-2025
DEFINITION  Carries the codon-optimized X. dendrorhous natR gene.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 2712)
  AUTHORS   Tobin EE, Collins JH, Marsan CB, Nadeau GT, Mori K, Lipzen A, Mondo 
            S, Grigoriev IV, Young EM
  TITLE     Omics-driven onboarding of the carotenoid producing red yeast 
            Xanthophyllomyces dendrorhous CBS 6938.
  JOURNAL   Appl Microbiol Biotechnol. 2024 Dec 28;108(1):547. doi: 
            10.1007/s00253-024-13379-w.
  PUBMED    39731599
REFERENCE   2  (bases 1 to 2712)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Aug 7, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; journalName: "Appl 
            Microbiol Biotechnol."; date: "2024-12-28"; volume: "108(1):547. 
            doi"; pages: " 10.1007/s00253-024-13379-w"
COMMENT     Sequence Label: p0AmpBC-natR
FEATURES             Location/Qualifiers
     source          1..2712
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     rep_origin      complement(138..726)
                     /direction=LEFT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     complement(218..237)
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     CDS             complement(join(897..1688,1689..1757))
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     primer_bind     1520..1539
                     /label=Amp-R
                     /note="Ampicillin resistance gene, reverse primer"
     promoter        complement(1758..1862)
                     /gene="bla"
                     /label=AmpR promoter
     primer_bind     1930..1948
                     /label=pBRforEco
                     /note="pBR322 vectors, upsteam of EcoRI site, forward 
                     primer"
     primer_bind     complement(1986..2008)
                     /label=pGEX 3'
                     /note="pGEX vectors, reverse primer"
     primer_bind     2108..2127
                     /label=pRS-marker
                     /note="pRS vectors, use to sequence yeast selectable 
                     marker"
     CDS             2139..2711
                     /codon_start=1
                     /gene="Streptomyces noursei nat1"
                     /product="nourseothricin acetyltransferase"
                     /label=NrsR
                     /note="confers resistance to nourseothricin"
                     /translation="MGTTLDDTAYRYRTSVPGDAEAIEALDGSFTTDTVFRVTATGDGF
                     TLREVPVDPPLTKVFPDDESDDESDDGEDGDPDSRTFVAYGDDGDLAGFVVVSYSGWNR
                     RLTVEDIEVAPEHRGHGVGRALMGLATEFARERGAGHLWLEVTNVNAPAIHAYRRMGFT
                     LCGLDTALYDGTASDGEQALYMSMPCP"
ORIGIN
        1 agagaccgag cggtatcagc tcactcaaag gcggtaatac ggttatccac agaatcaggg
       61 gataacgcag gaaagaacat gtgagcaaaa ggccagcaaa aggccaggaa ccgtaaaaag
      121 gccgcgttgc tggcgttttt ccataggctc cgcccccctg acgagcatca caaaaatcga
      181 cgctcaagtc agaggtggcg aaacccgaca ggactataaa gataccaggc gtttccccct
      241 ggaagctccc tcgtgcgctc tcctgttccg accctgccgc ttaccggata cctgtccgcc
      301 tttctccctt cgggaagcgt ggcgctttct catagctcac gctgtaggta tctcagttcg
      361 gtgtaggtcg ttcgctccaa gctgggctgt gtgcacgaac cccccgttca gcccgaccgc
      421 tgcgccttat ccggtaacta tcgtcttgag cccaacccgg taagacacga cttatcgcca
      481 ctggcagcag ccactggtaa caggattagc agagcgaggt atgtaggcgg tgctacagag
      541 ttcttgaagt ggtggcctaa ctacggctac actagaagaa cagtatttgg tatctgcgct
      601 ctgctgaagc cagttacctt cggaaaaaga gttggtagct cttgatccgg caaacaaacc
      661 accgctggta gcggtggttt ttttgtttgc aagcagcaga ttacgcgcag aaaaaaagga
      721 tctcaagaag atcctttgat cttttctacg gggtctgacg ctcagtggaa cgaaaactca
      781 cgttaaggga ttttggtcat gagattatca aaaaggatct tcacctagat ccttttaaat
      841 taaaaatgaa gttttaaatc aatctaaagt atatatgagt aaacttggtc tgacagttac
      901 caatgcttaa tcagtgaggc acctatctca gcgatctgtc tatttcgttc atccatagtt
      961 gcctggctcc ccgtcgtgta gataactacg atacgggagg gcttaccatc tggccccagt
     1021 gctgcaatga taccgcgaga gccacgctca ccggctccag atttatcagc aataaaccag
     1081 ccagccggaa gggccgagcg cagaagtggt cctgcaactt tatccgcctc catccagtct
     1141 attaattgtt gccgggaagc tagagtaagt agttcgccag ttaatagttt gcgcaacgtt
     1201 gttgccattg ctacaggcat cgtggtgtca cgctcgtcgt ttggtatggc ttcattcagc
     1261 tccggttccc aacgatcaag gcgagttaca tgatccccca tgttgtgcaa aaaagcggtt
     1321 agctccttcg gtcctccgat cgttgtcaga agtaagttgg ccgcagtgtt atcactcatg
     1381 gttatggcag cactgcataa ttctcttact gtcatgccat ccgtaagatg cttttctgtg
     1441 actggtgagt actcaaccaa gtcattctga gaatagtgta tgcggcgacc gagttgctct
     1501 tgcccggcgt caatacggga taataccgcg ccacatagca gaactttaaa agtgctcatc
     1561 attggaaaac gttcttcggg gcgaaaactc tcaaggatct taccgctgtt gagatccagt
     1621 tcgatgtaac ccactcgtgc acccaactga tcttcagcat cttttacttt caccagcgtt
     1681 tctgggtgag caaaaacagg aaggcaaaat gccgcaaaaa agggaataag ggcgacacgg
     1741 aaatgttgaa tactcatact cttccttttt caatattatt gaagcattta tcagggttat
     1801 tgtctcatga gcggatacat atttgaatgt atttagaaaa ataaacaaat aggggttccg
     1861 cgcacatttc cccgaaaagt gccacctgac gtctaagaaa ccattattat catgacatta
     1921 acctataaaa ataggcgtat cacgaggccc tttcgtctcg cgcgtttcgg tgatgacggt
     1981 gaaaacctct gacacatgca gctcccggag acggtcacag cttgtctgta agcggatgcc
     2041 gggagcagac aagcccgtca gggcgcgtca gcgggtgttg gcgggtgtcg gggctggctt
     2101 aactatgcgg catcagagca gattgtactg ggtctcaaat gggtaccact cttgacgaca
     2161 cggcttaccg gtaccgcacc agtgtcccgg gggacgccga ggccatcgag gcactggatg
     2221 ggtccttcac caccgacacc gtattccgcg tcaccgccac cggggacggc ttcaccctgc
     2281 gggaggtgcc ggtggacccg cccctgacca aggtgttccc cgacgacgaa tcggacgacg
     2341 aatcggacga cggggaggac ggcgacccgg attcccggac gttcgtcgcg tacggggacg
     2401 acggcgacct ggcgggcttc gtggtcgtct cgtactccgg ctggaaccgc cggctgaccg
     2461 tcgaggacat cgaggtcgcc ccggagcacc gggggcacgg ggtcgggcgc gcgttgatgg
     2521 ggctcgcgac ggagttcgcc cgcgagcggg gcgccgggca cctctggctg gaggtcacca
     2581 acgtcaacgc accggcgatc cacgcgtacc ggcggatggg gttcaccctc tgcggcctgg
     2641 acaccgccct gtacgacggc accgcctcgg acggcgagca ggcgctctac atgagcatgc
     2701 cctgccccta aa
//
