LOCUS       sequence-168042-        3705 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  Can be used for in situ hybridisation or other purposes.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 3705)
  AUTHORS   Hall TE, Martel N, Lo HP, Xiong Z, Parton RG
  TITLE     A plasmid library of full-length zebrafish rab proteins for in vivo 
            cell biology.
  JOURNAL   Cell Logist. 2017 Mar 1;7(1):e1301151. doi: 
            10.1080/21592799.2017.1301151. eCollection 2017.
  PUBMED    28396820
REFERENCE   2  (bases 1 to 3705)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; journalName: "Cell 
            Logist."; date: "2017-03-1"; volume: "7(1):e1301151. doi"; pages: " 
            10.1080/21592799.2017.1301151. eCollection 2017"
COMMENT     Sequence Label: Rab39ba cds in pGem-T Easy
FEATURES             Location/Qualifiers
     source          1..3705
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     promoter        210..314
                     /gene="bla"
                     /label=AmpR promoter
     CDS             join(315..383,384..1175)
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     primer_bind     complement(533..552)
                     /label=Amp-R
                     /note="Ampicillin resistance gene, reverse primer"
     rep_origin      1346..1934
                     /direction=RIGHT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     1835..1854
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     primer_bind     2088..2105
                     /label=L4440
                     /note="L4440 vector, forward primer"
     protein_bind    2222..2243
                     /label=CAP binding site
                     /bound_moiety="E. coli catabolite activator protein"
                     /note="CAP binding activates transcription in the presence 
                     of cAMP."
     promoter        join(2258..2263,2264..2281,2282..2288)
                     /label=lac promoter
                     /note="promoter for the E. coli lac operon"
     protein_bind    2296..2312
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     primer_bind     2301..2323
                     /label=M13/pUC Reverse
                     /note="In lacZ gene"
     primer_bind     2320..2336
                     /label=M13 rev
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     primer_bind     2320..2336
                     /label=M13 Reverse
                     /note="In lacZ gene. Also called M13-rev"
     promoter        2354..2372
                     /label=SP6 promoter
                     /note="promoter for bacteriophage SP6 RNA polymerase"
     primer_bind     2354..2371
                     /label=SP6
                     /note="SP6 promoter, forward primer"
     regulatory      3156..3165
                     /label=Kozak sequence
                     /note="vertebrate consensus sequence for strong initiation 
                     of translation (Kozak, 1987)"
                     /regulatory_class="other"
     regulatory      3160..3169
                     /label=Kozak sequence
                     /note="vertebrate consensus sequence for strong initiation 
                     of translation (Kozak, 1987)"
                     /regulatory_class="other"
     primer_bind     complement(3199..3218)
                     /label=T7
                     /note="T7 promoter, forward primer"
     promoter        complement(3200..3218)
                     /label=T7 promoter
                     /note="promoter for bacteriophage T7 RNA polymerase"
     primer_bind     complement(3225..3242)
                     /label=M13 Forward
                     /note="In lacZ gene. Also called M13-F20 or M13 (-21) 
                     Forward"
     primer_bind     complement(3225..3241)
                     /label=M13 fwd
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     primer_bind     complement(3234..3256)
                     /label=M13/pUC Forward
                     /note="In lacZ gene"
     rep_origin      join(3382..3705,1..132)
                     /direction=RIGHT
                     /label=f1 ori
                     /note="f1 bacteriophage origin of replication; arrow 
                     indicates direction of (+) strand synthesis"
     primer_bind     complement(3469..3488)
                     /label=F1ori-R
                     /note="F1 origin, reverse primer"
     primer_bind     3679..3700
                     /label=F1ori-F
                     /note="F1 origin, forward primer"
ORIGIN
        1 cactcaaccc tatctcggtc tattcttttg atttataagg gattttgccg atttcggcct
       61 attggttaaa aaatgagctg atttaacaaa aatttaacgc gaattttaac aaaatattaa
      121 cgcttacaat ttcctgatgc ggtattttct ccttacgcat ctgtgcggta tttcacaccg
      181 catcaggtgg cacttttcgg ggaaatgtgc gcggaacccc tatttgttta tttttctaaa
      241 tacattcaaa tatgtatccg ctcatgagac aataaccctg ataaatgctt caataatatt
      301 gaaaaaggaa gagtatgagt attcaacatt tccgtgtcgc ccttattccc ttttttgcgg
      361 cattttgcct tcctgttttt gctcacccag aaacgctggt gaaagtaaaa gatgctgaag
      421 atcagttggg tgcacgagtg ggttacatcg aactggatct caacagcggt aagatccttg
      481 agagttttcg ccccgaagaa cgttttccaa tgatgagcac ttttaaagtt ctgctatgtg
      541 gcgcggtatt atcccgtatt gacgccgggc aagagcaact cggtcgccgc atacactatt
      601 ctcagaatga cttggttgag tactcaccag tcacagaaaa gcatcttacg gatggcatga
      661 cagtaagaga attatgcagt gctgccataa ccatgagtga taacactgcg gccaacttac
      721 ttctgacaac gatcggagga ccgaaggagc taaccgcttt tttgcacaac atgggggatc
      781 atgtaactcg ccttgatcgt tgggaaccgg agctgaatga agccatacca aacgacgagc
      841 gtgacaccac gatgcctgta gcaatggcaa caacgttgcg caaactatta actggcgaac
      901 tacttactct agcttcccgg caacaattaa tagactggat ggaggcggat aaagttgcag
      961 gaccacttct gcgctcggcc cttccggctg gctggtttat tgctgataaa tctggagccg
     1021 gtgagcgtgg gtctcgcggt atcattgcag cactggggcc agatggtaag ccctcccgta
     1081 tcgtagttat ctacacgacg gggagtcagg caactatgga tgaacgaaat agacagatcg
     1141 ctgagatagg tgcctcactg attaagcatt ggtaactgtc agaccaagtt tactcatata
     1201 tactttagat tgatttaaaa cttcattttt aatttaaaag gatctaggtg aagatccttt
     1261 ttgataatct catgaccaaa atcccttaac gtgagttttc gttccactga gcgtcagacc
     1321 ccgtagaaaa gatcaaagga tcttcttgag atcctttttt tctgcgcgta atctgctgct
     1381 tgcaaacaaa aaaaccaccg ctaccagcgg tggtttgttt gccggatcaa gagctaccaa
     1441 ctctttttcc gaaggtaact ggcttcagca gagcgcagat accaaatact gttcttctag
     1501 tgtagccgta gttaggccac cacttcaaga actctgtagc accgcctaca tacctcgctc
     1561 tgctaatcct gttaccagtg gctgctgcca gtggcgataa gtcgtgtctt accgggttgg
     1621 actcaagacg atagttaccg gataaggcgc agcggtcggg ctgaacgggg ggttcgtgca
     1681 cacagcccag cttggagcga acgacctaca ccgaactgag atacctacag cgtgagctat
     1741 gagaaagcgc cacgcttccc gaagggagaa aggcggacag gtatccggta agcggcaggg
     1801 tcggaacagg agagcgcacg agggagcttc cagggggaaa cgcctggtat ctttatagtc
     1861 ctgtcgggtt tcgccacctc tgacttgagc gtcgattttt gtgatgctcg tcaggggggc
     1921 ggagcctatg gaaaaacgcc agcaacgcgg cctttttacg gttcctggcc ttttgctggc
     1981 cttttgctca catgttcttt cctgcgttat cccctgattc tgtggataac cgtattaccg
     2041 cctttgagtg agctgatacc gctcgccgca gccgaacgac cgagcgcagc gagtcagtga
     2101 gcgaggaagc ggaagagcgc ccaatacgca aaccgcctct ccccgcgcgt tggccgattc
     2161 attaatgcag ctggcacgac aggtttcccg actggaaagc gggcagtgag cgcaacgcaa
     2221 ttaatgtgag ttagctcact cattaggcac cccaggcttt acactttatg cttccggctc
     2281 gtatgttgtg tggaattgtg agcggataac aatttcacac aggaaacagc tatgaccatg
     2341 attacgccaa gctatttagg tgacactata gaatactcaa gctatgcatc caacgcgttg
     2401 ggagctctcc catatggtcg acctgcaggc ggccgcgaat tcactagtga ttggtgaaac
     2461 gagagtctgg tgatcaacag aggcagcggc ggtcactctt ggtcacctcc tcggacgaat
     2521 gcaccacatt gggcacgaag ccgctcttga ccccctccca gccctcctga atggtaatat
     2581 ccccacattt gaccagctcg aagatgtcgc gtgtgagctc ggtgaaggcc ttctccacgt
     2641 ttatggcgtc gcgggcagag gtctccacgt agcgcatgcc gtaagcggct gccagctttt
     2701 cggcctcctg ctggctgacc tgcctctgct gctccaggtc gcacttgtgt cccaccagga
     2761 tgaagacaat gctgtgcggc tgtacgtgac tgcgcgcctc ctccagccac tcgtgcacat
     2821 tctggaagga gcgccggttg gtgatgtcga aaagcaaaag gccacccact gaattgcgat
     2881 aataagccct tgtgatagat ctgaacctct cctggcctgc tgtgtcccag atctgaagct
     2941 tgatgcgctt gccaggttca atctccacca gccgggagaa gaaatccacg ccaacagtcg
     3001 ggtcagacac ctgtgcaaaa cgtccttctg tgaagcgtct gatcaaacaa gacttcccca
     3061 ctgtcgagtc gccaatgaca atcagtctga actggtacag ccatatagct tccatatctt
     3121 acttgatctt cgttgtgctt aatcgaattc ccgcggccgc catggcggcc gggagcatgc
     3181 gacgtcgggc ccaattcgcc ctatagtgag tcgtattaca attcactggc cgtcgtttta
     3241 caacgtcgtg actgggaaaa ccctggcgtt acccaactta atcgccttgc agcacatccc
     3301 cctttcgcca gctggcgtaa tagcgaagag gcccgcaccg atcgcccttc ccaacagttg
     3361 cgcagcctga atggcgaatg gacgcgccct gtagcggcgc attaagcgcg gcgggtgtgg
     3421 tggttacgcg cagcgtgacc gctacacttg ccagcgccct agcgcccgct cctttcgctt
     3481 tcttcccttc ctttctcgcc acgttcgccg gctttccccg tcaagctcta aatcgggggc
     3541 tccctttagg gttccgattt agtgctttac ggcacctcga ccccaaaaaa cttgattagg
     3601 gtgatggttc acgtagtggg ccatcgccct gatagacggt ttttcgccct ttgacgttgg
     3661 agtccacgtt ctttaatagt ggactcttgt tccaaactgg aacaa
//
