LOCUS       sequence-176189-        3689 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  Can be used for in situ hybridisation or other purposes.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 3689)
  AUTHORS   Hall TE, Martel N, Lo HP, Xiong Z, Parton RG
  TITLE     A plasmid library of full-length zebrafish rab proteins for in vivo 
            cell biology.
  JOURNAL   Cell Logist. 2017 Mar 1;7(1):e1301151. doi: 
            10.1080/21592799.2017.1301151. eCollection 2017.
  PUBMED    28396820
REFERENCE   2  (bases 1 to 3689)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; journalName: "Cell 
            Logist."; date: "2017-03-1"; volume: "7(1):e1301151. doi"; pages: " 
            10.1080/21592799.2017.1301151. eCollection 2017"
COMMENT     Sequence Label: Rab4a cds in pGem-T Easy
FEATURES             Location/Qualifiers
     source          1..3689
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     primer_bind     complement(31..48)
                     /label=L4440
                     /note="L4440 vector, forward primer"
     rep_origin      complement(202..790)
                     /direction=LEFT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     complement(282..301)
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     CDS             complement(join(961..1752,1753..1821))
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     primer_bind     1584..1603
                     /label=Amp-R
                     /note="Ampicillin resistance gene, reverse primer"
     promoter        complement(1822..1926)
                     /gene="bla"
                     /label=AmpR promoter
     rep_origin      complement(2004..2459)
                     /direction=LEFT
                     /label=f1 ori
                     /note="f1 bacteriophage origin of replication; arrow 
                     indicates direction of (+) strand synthesis"
     primer_bind     complement(2141..2162)
                     /label=F1ori-F
                     /note="F1 origin, forward primer"
     primer_bind     2353..2372
                     /label=F1ori-R
                     /note="F1 origin, reverse primer"
     primer_bind     2585..2607
                     /label=M13/pUC Forward
                     /note="In lacZ gene"
     primer_bind     2599..2616
                     /label=M13 Forward
                     /note="In lacZ gene. Also called M13-F20 or M13 (-21) 
                     Forward"
     primer_bind     2600..2616
                     /label=M13 fwd
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     primer_bind     2623..2642
                     /label=T7
                     /note="T7 promoter, forward primer"
     promoter        2623..2641
                     /label=T7 promoter
                     /note="promoter for bacteriophage T7 RNA polymerase"
     regulatory      2672..2681
                     /label=Kozak sequence
                     /note="vertebrate consensus sequence for strong initiation 
                     of translation (Kozak, 1987)"
                     /regulatory_class="other"
     regulatory      2676..2685
                     /label=Kozak sequence
                     /note="vertebrate consensus sequence for strong initiation 
                     of translation (Kozak, 1987)"
                     /regulatory_class="other"
     promoter        complement(3453..3471)
                     /label=SP6 promoter
                     /note="promoter for bacteriophage SP6 RNA polymerase"
     primer_bind     complement(3454..3471)
                     /label=SP6
                     /note="SP6 promoter, forward primer"
     primer_bind     complement(3489..3505)
                     /label=M13 rev
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     primer_bind     complement(3489..3505)
                     /label=M13 Reverse
                     /note="In lacZ gene. Also called M13-rev"
     primer_bind     complement(3502..3524)
                     /label=M13/pUC Reverse
                     /note="In lacZ gene"
     protein_bind    3513..3529
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     promoter        complement(join(3537..3543,3544..3561,3562..3567))
                     /label=lac promoter
                     /note="promoter for the E. coli lac operon"
     protein_bind    3582..3603
                     /label=CAP binding site
                     /bound_moiety="E. coli catabolite activator protein"
                     /note="CAP binding activates transcription in the presence 
                     of cAMP."
ORIGIN
        1 cggtttgcgt attgggcgct cttccgcttc ctcgctcact gactcgctgc gctcggtcgt
       61 tcggctgcgg cgagcggtat cagctcactc aaaggcggta atacggttat ccacagaatc
      121 aggggataac gcaggaaaga acatgtgagc aaaaggccag caaaaggcca ggaaccgtaa
      181 aaaggccgcg ttgctggcgt ttttccatag gctccgcccc cctgacgagc atcacaaaaa
      241 tcgacgctca agtcagaggt ggcgaaaccc gacaggacta taaagatacc aggcgtttcc
      301 ccctggaagc tccctcgtgc gctctcctgt tccgaccctg ccgcttaccg gatacctgtc
      361 cgcctttctc ccttcgggaa gcgtggcgct ttctcatagc tcacgctgta ggtatctcag
      421 ttcggtgtag gtcgttcgct ccaagctggg ctgtgtgcac gaaccccccg ttcagcccga
      481 ccgctgcgcc ttatccggta actatcgtct tgagtccaac ccggtaagac acgacttatc
      541 gccactggca gcagccactg gtaacaggat tagcagagcg aggtatgtag gcggtgctac
      601 agagttcttg aagtggtggc ctaactacgg ctacactaga agaacagtat ttggtatctg
      661 cgctctgctg aagccagtta ccttcggaaa aagagttggt agctcttgat ccggcaaaca
      721 aaccaccgct ggtagcggtg gtttttttgt ttgcaagcag cagattacgc gcagaaaaaa
      781 aggatctcaa gaagatcctt tgatcttttc tacggggtct gacgctcagt ggaacgaaaa
      841 ctcacgttaa gggattttgg tcatgagatt atcaaaaagg atcttcacct agatcctttt
      901 aaattaaaaa tgaagtttta aatcaatcta aagtatatat gagtaaactt ggtctgacag
      961 ttaccaatgc ttaatcagtg aggcacctat ctcagcgatc tgtctatttc gttcatccat
     1021 agttgcctga ctccccgtcg tgtagataac tacgatacgg gagggcttac catctggccc
     1081 cagtgctgca atgataccgc gagacccacg ctcaccggct ccagatttat cagcaataaa
     1141 ccagccagcc ggaagggccg agcgcagaag tggtcctgca actttatccg cctccatcca
     1201 gtctattaat tgttgccggg aagctagagt aagtagttcg ccagttaata gtttgcgcaa
     1261 cgttgttgcc attgctacag gcatcgtggt gtcacgctcg tcgtttggta tggcttcatt
     1321 cagctccggt tcccaacgat caaggcgagt tacatgatcc cccatgttgt gcaaaaaagc
     1381 ggttagctcc ttcggtcctc cgatcgttgt cagaagtaag ttggccgcag tgttatcact
     1441 catggttatg gcagcactgc ataattctct tactgtcatg ccatccgtaa gatgcttttc
     1501 tgtgactggt gagtactcaa ccaagtcatt ctgagaatag tgtatgcggc gaccgagttg
     1561 ctcttgcccg gcgtcaatac gggataatac cgcgccacat agcagaactt taaaagtgct
     1621 catcattgga aaacgttctt cggggcgaaa actctcaagg atcttaccgc tgttgagatc
     1681 cagttcgatg taacccactc gtgcacccaa ctgatcttca gcatctttta ctttcaccag
     1741 cgtttctggg tgagcaaaaa caggaaggca aaatgccgca aaaaagggaa taagggcgac
     1801 acggaaatgt tgaatactca tactcttcct ttttcaatat tattgaagca tttatcaggg
     1861 ttattgtctc atgagcggat acatatttga atgtatttag aaaaataaac aaataggggt
     1921 tccgcgcaca tttccccgaa aagtgccacc tgatgcggtg tgaaataccg cacagatgcg
     1981 taaggagaaa ataccgcatc aggaaattgt aagcgttaat attttgttaa aattcgcgtt
     2041 aaatttttgt taaatcagct cattttttaa ccaataggcc gaaatcggca aaatccctta
     2101 taaatcaaaa gaatagaccg agatagggtt gagtgttgtt ccagtttgga acaagagtcc
     2161 actattaaag aacgtggact ccaacgtcaa agggcgaaaa accgtctatc agggcgatgg
     2221 cccactacgt gaaccatcac cctaatcaag ttttttgggg tcgaggtgcc gtaaagcact
     2281 aaatcggaac cctaaaggga gcccccgatt tagagcttga cggggaaagc cggcgaacgt
     2341 ggcgagaaag gaagggaaga aagcgaaagg agcgggcgct agggcgctgg caagtgtagc
     2401 ggtcacgctg cgcgtaacca ccacacccgc cgcgcttaat gcgccgctac agggcgcgtc
     2461 cattcgccat tcaggctgcg caactgttgg gaagggcgat cggtgcgggc ctcttcgcta
     2521 ttacgccagc tggcgaaagg gggatgtgct gcaaggcgat taagttgggt aacgccaggg
     2581 ttttcccagt cacgacgttg taaaacgacg gccagtgaat tgtaatacga ctcactatag
     2641 ggcgaattgg gcccgacgtc gcatgctccc ggccgccatg gcggccgcgg gaattcgatt
     2701 tctgttcaga gggacgtgtg ttaacagcca cactcctgga tgctctcggc ttgtgcccgt
     2761 ctgggtgaac gcagctgtcg aagagccgcg tctccatact ggattcctga acccatccgc
     2821 tctgggtcca gctctcctga ttcaattttg ttaaggattt ttcgagcaca ctggacgaaa
     2881 gcttcctcca cattctcccc tgtcagagca ctggtctcca aaaacataag ctcattctcc
     2941 tgagcgaagc gtgaagcctc cagaaaggtc acctcgcggt cagcatccag atccttcttg
     3001 tttccacata gtatgatcac tatgttctga ctggccaaca tccgggcatc tgtcagccag
     3061 ttggttagag cgttgtatgt ttctcgacta gtgatgtcat agactagaag agcccctgct
     3121 gcgcctctgt aataactcct agttacagac ctgaaacgct cctgtcctgc tgtgtcccag
     3181 atctggagct ttacaaactt attgaccacg ctgattatct tcgaaccaaa ttcaacccca
     3241 atagtgtgat ttgagtcatc tttgaatctt ttttctatga actgatgaag aagacaggat
     3301 tttcctgttc cagcattccc aatcacaaga aacttaaaca agaaatcgta tgtctctgac
     3361 atgactggcg ctaatcacta gtgaattcgc ggccgcctgc aggtcgacca tatgggagag
     3421 ctcccaacgc gttggatgca tagcttgagt attctatagt gtcacctaaa tagcttggcg
     3481 taatcatggt catagctgtt tcctgtgtga aattgttatc cgctcacaat tccacacaac
     3541 atacgagccg gaagcataaa gtgtaaagcc tggggtgcct aatgagtgag ctaactcaca
     3601 ttaattgcgt tgcgctcact gcccgctttc cagtcgggaa acctgtcgtg ccagctgcat
     3661 taatgaatcg gccaacgcgc ggggagagg
//
