LOCUS       sequence-317144-        6377 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  40 repeats of Pecf11 sponge.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 6377)
  AUTHORS   Wan X, Pinto F, Yu L, Wang B
  TITLE     Synthetic protein-binding DNA sponge as a tool to tune gene 
            expression and mitigate protein toxicity.
  JOURNAL   Nat Commun. 2020 Nov 24;11(1):5961. doi: 10.1038/s41467-020-19552-9.
  PUBMED    33235249
REFERENCE   2  (bases 1 to 6377)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; journalName: "Nat 
            Commun."; date: "2020-11-24"; volume: "11(1):5961. doi"; pages: " 
            10.1038/s41467-020-19552-9"
COMMENT     Sequence Label: pXWS40Pecf11
FEATURES             Location/Qualifiers
     source          1..6377
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     CDS             complement(141..956)
                     /codon_start=1
                     /product="aminoglycoside phosphotransferase"
                     /label=KanR
                     /note="confers resistance to kanamycin in bacteria or G418 
                     (Geneticin(R)) in eukaryotes"
                     /translation="MSHIQRETSCSRPRLNSNMDADLYGYKWARDNVGQSGATIYRLYG
                     KPDAPELFLKHGKGSVANDVTDEMVRLNWLTEFMPLPTIKHFIRTPDDAWLLTTAIPGK
                     TAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDA
                     SDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI
                     ADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF"
     CDS             complement(141..956)
                     /codon_start=1
                     /gene="aph(3')-Ia"
                     /product="aminoglycoside phosphotransferase"
                     /label=KanR
                     /note="confers resistance to kanamycin in bacteria or G418 
                     (Geneticin(R)) in eukaryotes"
                     /translation="MSHIQRETSCSRPRLNSNMDADLYGYKWARDNVGQSGATIYRLYG
                     KPDAPELFLKHGKGSVANDVTDEMVRLNWLTEFMPLPTIKHFIRTPDDAWLLTTAIPGK
                     TAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDA
                     SDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI
                     ADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF"
     primer_bind     864..883
                     /label=Kan-R
                     /note="Kanamycin resistance gene, reverse primer"
     primer_bind     948..967
                     /label=pENTR-R
                     /note="pENTR vectors, reverse primer"
     rep_origin      complement(1551..2095)
                     /direction=LEFT
                     /label=p15A ori
                     /note="Plasmids containing the medium-copy-number p15A 
                     origin of replication can be propagated in E. coli cells 
                     that contain a second plasmid with the ColE1 origin.
                     "
     primer_bind     complement(1630..1649)
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     primer_bind     2563..2581
                     /label=pBRforEco
                     /note="pBR322 vectors, upsteam of EcoRI site, forward 
                     primer"
     terminator      complement(2585..2628)
                     /label=bacterial terminator
                     /note="putative bacterial transcription terminator"
     misc_feature    2631..2652
                     /label=BioBrick prefix
                     /note="BioBrick prefix for parts that do not start with 
                     ""ATG"""
     terminator      6237..6308
                     /label=rrnB T1 terminator
                     /note="transcription terminator T1 from the E. coli rrnB 
                     gene"
     terminator      6324..6351
                     /label=T7Te terminator
                     /note="phage T7 early transcription terminator"
     misc_feature    join(6358..6377,1)
                     /label=BioBrick suffix
                     /note="universal suffix for all parts"
ORIGIN
        1 ggcttcctcg ctcactgact cgctgcgctc ggtcgttcgg ctgcggcgag cggtatcagc
       61 tcactcaaag gcggtaatct cgagtcccgt caagtcagcg taatgctctg ccagtgttac
      121 aaccaattaa ccaattctga ttagaaaaac tcatcgagca tcaaatgaaa ctgcaattta
      181 ttcatatcag gattatcgat accatatttt tgaaaaagcc gtttctgtaa tgaaggagaa
      241 aactcaccga ggcagttcca taggatggca agatcctggt atcggtctgc gattccgact
      301 cgtccaacat caatacaacc tattaatttc ccctcgtcaa aaataaggtt atcaagtgag
      361 aaatcaccat gagtgacgac tgaatccggt gagaatggca aaagcttatg catttctttc
      421 cagacttgtt caacaggcca gccattacgc tcgtcatcaa aatcactcgc atcaaccaaa
      481 ccgttattca ttcgtgattg cgcctgagcg agacgaaata cgcgatcgct gttaaaagga
      541 caattacaaa caggaatcga atgcaaccgg cgcaggaaca ctgccagcgc atcaacaata
      601 ttttcacctg aatcaggata ttcttctaat acctggaatg ctgttttccc ggggatcgca
      661 gtggtgagta accatgcatc atcaggagta cggataaaat gcttgatggt cggaagaggc
      721 ataaattccg tcagccagtt tagtctgacc atctcatctg taacatcatt ggcaacgcta
      781 cctttgccat gtttcagaaa caactctggc gcatcgggct tcccatacaa tcgatagatt
      841 gtcgcacctg attgcccgac attatcgcga gcccatttat acccatataa atcagcatcc
      901 atgttggaat ttaatcgcgg cctggagcaa gacgtttccc gttgaatatg gctcataaca
      961 ccccttgtat tactgtttat gtaagcagac agttttattg ttcatgatga tatattttta
     1021 tcttgtgcaa tgtaacatca gagattttga gacacaacgt ggctttgttg aataaatcga
     1081 acttttgctg agttgaagga tcagatcacg catcttcccg acaacgcaga ccgttccgtg
     1141 gcaaagcaaa agttcaaaat caccaactgg tccacctaca acaaagctct catcaaccgt
     1201 ggctccctca ctttctggct ggatgatggg gcgattcagg cctggtatga gtcagcaaca
     1261 ccttcttcac gaggcagacc tcagcgctag cggagtgtat actggcttac tatgttggca
     1321 ctgatgaggg tgtcagtgaa gtgcttcatg tggcaggaga aaaaaggctg caccggtgcg
     1381 tcagcagaat atgtgataca ggatatattc cgcttcctcg ctcactgact cgctacgctc
     1441 ggtcgttcga ctgcggcgag cggaaatggc ttacgaacgg ggcggagatt tcctggaaga
     1501 tgccaggaag atacttaaca gggaagtgag agggccgcgg caaagccgtt tttccatagg
     1561 ctccgccccc tgacaagcat cacgaaatct gacgctcaaa tcagtggtgg cgaaacccga
     1621 caggactata aagataccag gcgtttcccc ctggcggctc cctcgtgcgc tctcctgttc
     1681 ctgcctttcg gtttaccggt gtcattccgc tgttatggcc gcgtttgtct cattccacgc
     1741 ctgacactca gttccgggta ggcagttcgc tccaagctgg actgtatgca cgaacccccc
     1801 gttcagtccg accgctgcgc cttatccggt aactatcgtc ttgagtccaa cccggaaaga
     1861 catgcaaaag caccactggc agcagccact ggtaattgat ttagaggagt tagtcttgaa
     1921 gtcatgcgcc ggttaaggct aaactgaaag gacaagtttt ggtgactgcg ctcctccaag
     1981 ccagttacct cggttcaaag agttggtagc tcagagaacc ttcaaaaaac cgccctgcaa
     2041 ggcggttttt tcgttttcag agcaagagat tacgcgcaga ccaaaacgat ctcaagaaga
     2101 tcatcttatt aaggggtctg acgctcagtg gaacgaaaac tcacgttaag ggattttggt
     2161 catgagatta tcaaaaagga tcttcaccta gatcctttta aattaaaaat gaagttttaa
     2221 atcaatctaa agtatatatg agtaaacttg gtctgacagt taccaatgct taatcagtga
     2281 ggcacctatc tcagcgatct gtctatttcg ttcatccata gttgcctgac tccccgtcgt
     2341 gtagataact acgatacggg agggcttacc atctggcccc agtgctgcaa tgataccgcg
     2401 agacccacgc tcaccggctc cagatttatc agcaataaac cagccagccg gaagggccga
     2461 gcgcagaagt ggtcctgcaa ctttatccgc ctccatccag tctattccat ggtgccacct
     2521 gacgtctaag aaaccattat tatcatgaca ttaacctata aaaataggcg tatcacgagg
     2581 cagaatttca gataaaaaaa atccttagct ttcgctaagg atgatttctg gaattcgcgg
     2641 ccgcttctag agatcgattt tagagctgcc gcctccacac cgctcgtcac atcctgtgat
     2701 ccactcttca tcccgctacg taacacctct gtactcagct tatctcgggc ctccacaccg
     2761 ctcgtcacat cctgtgatcc actcttcatc ccgctacgta acacctctct taggtgtccc
     2821 tagaatgagt atcgatttta gagctgccgc ctccacaccg ctcgtcacat cctgtgatcc
     2881 actcttcatc ccgctacgta acacctctgt actcagctta tctcgggcct ccacaccgct
     2941 cgtcacatcc tgtgatccac tcttcatccc gctacgtaac acctctctta ggtgtcccta
     3001 gaatttccat cgattttaga gctgccgcct ccacaccgct cgtcacatcc tgtgatccac
     3061 tcttcatccc gctacgtaac acctctgtac tcagcttatc tcgggcctcc acaccgctcg
     3121 tcacatcctg tgatccactc ttcatcccgc tacgtaacac ctctcttagg tgtccctaga
     3181 atgactatcg attttagagc tgccgcctcc acaccgctcg tcacatcctg tgatccactc
     3241 ttcatcccgc tacgtaacac ctctgtactc agcttatctc gggcctccac accgctcgtc
     3301 acatcctgtg atccactctt catcccgcta cgtaacacct ctcttaggtg tccctagaat
     3361 tgatatcgat tttagagctg ccgcctccac accgctcgtc acatcctgtg atccactctt
     3421 catcccgcta cgtaacacct ctgtactcag cttatctcgg gcctccacac cgctcgtcac
     3481 atcctgtgat ccactcttca tcccgctacg taacacctct cttaggtgtc cctagaatta
     3541 ctagagatcg attttagagc tgccgcctcc acaccgctcg tcacatcctg tgatccactc
     3601 ttcatcccgc tacgtaacac ctctgtactc agcttatctc gggcctccac accgctcgtc
     3661 acatcctgtg atccactctt catcccgcta cgtaacacct ctcttaggtg tccctagaat
     3721 gagtatcgat tttagagctg ccgcctccac accgctcgtc acatcctgtg atccactctt
     3781 catcccgcta cgtaacacct ctgtactcag cttatctcgg gcctccacac cgctcgtcac
     3841 atcctgtgat ccactcttca tcccgctacg taacacctct cttaggtgtc cctagaattt
     3901 ccatcgattt tagagctgcc gcctccacac cgctcgtcac atcctgtgat ccactcttca
     3961 tcccgctacg taacacctct gtactcagct tatctcgggc ctccacaccg ctcgtcacat
     4021 cctgtgatcc actcttcatc ccgctacgta acacctctct taggtgtccc tagaatgact
     4081 atcgatttta gagctgccgc ctccacaccg ctcgtcacat cctgtgatcc actcttcatc
     4141 ccgctacgta acacctctgt actcagctta tctcgggcct ccacaccgct cgtcacatcc
     4201 tgtgatccac tcttcatccc gctacgtaac acctctctta ggtgtcccta gaattgatat
     4261 cgattttaga gctgccgcct ccacaccgct cgtcacatcc tgtgatccac tcttcatccc
     4321 gctacgtaac acctctgtac tcagcttatc tcgggcctcc acaccgctcg tcacatcctg
     4381 tgatccactc ttcatcccgc tacgtaacac ctctcttagg tgtccctaga attactagag
     4441 atcgatttta gagctgccgc ctccacaccg ctcgtcacat cctgtgatcc actcttcatc
     4501 ccgctacgta acacctctgt actcagctta tctcgggcct ccacaccgct cgtcacatcc
     4561 tgtgatccac tcttcatccc gctacgtaac acctctctta ggtgtcccta gaatgagtat
     4621 cgattttaga gctgccgcct ccacaccgct cgtcacatcc tgtgatccac tcttcatccc
     4681 gctacgtaac acctctgtac tcagcttatc tcgggcctcc acaccgctcg tcacatcctg
     4741 tgatccactc ttcatcccgc tacgtaacac ctctcttagg tgtccctaga atttccatcg
     4801 attttagagc tgccgcctcc acaccgctcg tcacatcctg tgatccactc ttcatcccgc
     4861 tacgtaacac ctctgtactc agcttatctc gggcctccac accgctcgtc acatcctgtg
     4921 atccactctt catcccgcta cgtaacacct ctcttaggtg tccctagaat gactatcgat
     4981 tttagagctg ccgcctccac accgctcgtc acatcctgtg atccactctt catcccgcta
     5041 cgtaacacct ctgtactcag cttatctcgg gcctccacac cgctcgtcac atcctgtgat
     5101 ccactcttca tcccgctacg taacacctct cttaggtgtc cctagaattg atatcgattt
     5161 tagagctgcc gcctccacac cgctcgtcac atcctgtgat ccactcttca tcccgctacg
     5221 taacacctct gtactcagct tatctcgggc ctccacaccg ctcgtcacat cctgtgatcc
     5281 actcttcatc ccgctacgta acacctctct taggtgtccc tagaattact agagatcgat
     5341 tttagagctg ccgcctccac accgctcgtc acatcctgtg atccactctt catcccgcta
     5401 cgtaacacct ctgtactcag cttatctcgg gcctccacac cgctcgtcac atcctgtgat
     5461 ccactcttca tcccgctacg taacacctct cttaggtgtc cctagaatga gtatcgattt
     5521 tagagctgcc gcctccacac cgctcgtcac atcctgtgat ccactcttca tcccgctacg
     5581 taacacctct gtactcagct tatctcgggc ctccacaccg ctcgtcacat cctgtgatcc
     5641 actcttcatc ccgctacgta acacctctct taggtgtccc tagaatttcc atcgatttta
     5701 gagctgccgc ctccacaccg ctcgtcacat cctgtgatcc actcttcatc ccgctacgta
     5761 acacctctgt actcagctta tctcgggcct ccacaccgct cgtcacatcc tgtgatccac
     5821 tcttcatccc gctacgtaac acctctctta ggtgtcccta gaatgactat cgattttaga
     5881 gctgccgcct ccacaccgct cgtcacatcc tgtgatccac tcttcatccc gctacgtaac
     5941 acctctgtac tcagcttatc tcgggcctcc acaccgctcg tcacatcctg tgatccactc
     6001 ttcatcccgc tacgtaacac ctctcttagg tgtccctaga attgatatcg attttagagc
     6061 tgccgcctcc acaccgctcg tcacatcctg tgatccactc ttcatcccgc tacgtaacac
     6121 ctctgtactc agcttatctc gggcctccac accgctcgtc acatcctgtg atccactctt
     6181 catcccgcta cgtaacacct ctcttaggtg tccctagaat tactagagcc aggcatcaaa
     6241 taaaacgaaa ggctcagtcg aaagactggg cctttcgttt tatctgttgt ttgtcggtga
     6301 acgctctcta ctagagtcac actggctcac cttcgggtgg gcctttctgc gtttatatac
     6361 tagtagcggc cgctgca
//
